PDB Method Taxonomy Organism Name Reference_pub Resolution Stage   Contents     Ligands 
7EU1 EM Eukaryote Arabidopsis thaliana The cryo-EM structure of A. thaliana Pol IV-RDR2 holoenzyme 34941388 3.86Å RNAP RNAP ZN,MG
5FLM EM Eukaryote Bos taurus Structure of transcribing mammalian RNA polymerase II 26789250 3.40 Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5OIK EM Eukaryote Bos taurus Structure of an RNA polymerase II-DSIF transcription elongation complex 28892040 3.70Å EC RNA polymerase II,Spt4,Spt5 ZN MG
7A8P EM Eukaryote Homo sapiens Structure of human mitochondrial RNA polymerase in complex with IMT inhibitor. 33328633 3.50Å Enzyme DNA-directed RNA polymerase, mitochondrial R4Q[ (3~{R})-1-[(2~{R})-2-[4-(2-chloranyl-4-fluoranyl-phenyl)-2-oxidanylidene-chromen-7-yl]oxypropanoyl]piperidine-3-carboxylic acid ]
2XUB XRD Eukaryote Homo sapiens Human RPC62 subunit structure 21358628 2.80Å RNAP RPC3
2XV4 XRD Eukaryote Homo sapiens Structure of human RPC62 (partial) 21358628 2.95Å RNAP RPC3 PO4
5AFQ XRD Eukaryote Homo sapiens Crystal structure of RPC62 - RPC32 beta 26394183 7.00Å RNAP RPC3,RPC32 BETA (RPC7L)
2GHQ XRD Eukaryote Homo sapiens CTD-specific phosphatase SCP1 in complex with peptide C-terminal domain of RNA polymerase II 17157258 2.05 Å RNAP RNAP II largest subunit,Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 MG
2GHT XRD Eukaryote Homo sapiens CTD-specific phosphatase SCP1 in complex with peptide from C-terminal domain of RNA polymerase II 17157258 1.80 Å RNAP RNAP II largest subunit,Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 MG
2LTO SOLUTIONNMR Eukaryote Homo sapiens TDRD3 complex 23066109 Subunit TDRD3,RPB1
3D9L XRD Eukaryote Homo sapiens Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxyl-terminal domain of RNA-polymerase II 18550522 2.20 Å CTD CTD-peptide,RNA-binding protein 16 GOL ACT
3D9M XRD Eukaryote Homo sapiens Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-polymerase II 18550522 2.20 Å CTD CTD-peptide,RNA-binding protein 16 SO4 NH4
3D9N XRD Eukaryote Homo sapiens Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-polymerase II 18550522 2.20 Å CTD CTD-peptide,RNA-binding protein 16 SO4
3D9O XRD Eukaryote Homo sapiens Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-polymerase II 18550522 2.20 Å CTD CTD-peptide,RNA-binding protein 16 SO4 NH4
3D9P XRD Eukaryote Homo sapiens Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-polymerase II 18550522 2.20 Å CTD CTD-peptide,RNA-binding protein 16 SO4
4JXT XRD Eukaryote Homo sapiens CID of human RPRD1A in complex with a phosphorylated peptide from RPB1-CTD 24997600 1.90 Å Subunit RPRD1A, RPRD1B UNX[ UNKNOWN ATOM OR ION ]
5IY6 EM Eukaryote Homo sapiens Human holo-PIC in the closed state 27193682 7.20 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1,TFIIH ZN MG
5IY7 EM Eukaryote Homo sapiens Human holo-PIC in the open state 27193682 8.60 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1,TFIIH ZN MG
5IY8 EM Eukaryote Homo sapiens Human holo-PIC in the initial transcribing state 27193682 7.90 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1,TFIIH ZN MG
5IY9 EM Eukaryote Homo sapiens Human holo-PIC in the initial transcribing state (no IIS) 27193682 6.30 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1,TFIIH ZN MG
5IYA EM Eukaryote Homo sapiens Human core-PIC in the closed state 27193682 5.40 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1 ZN MG
5IYB EM Eukaryote Homo sapiens Human core-PIC in the open state 27193682 3.90 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1 ZN MG
5IYC EM Eukaryote Homo sapiens Human core-PIC in the initial transcribing state 27193682 3.90 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1 ZN MG
5IYD EM Eukaryote Homo sapiens Human core-PIC in the initial transcribing state (no IIS) 27193682 3.90 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF ZN MG
6DRD EM Eukaryote Homo sapiens RNA pol II(g) 30190596 3.90Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,GRinL1A ZN
6O9L EM Eukaryote Homo sapiens Human holo-PIC in the closed state 31110295 7.20 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,TEFA protein 1,TFIIH,MAT1,CDK,Cyclin-H SF4[ IRON/SULFUR CLUSTER ] ZN MG
2C35 XRD Eukaryote Homo sapiens Subunits RPB4 and RPB7 of human RNA polymerase II 16282592 2.70 Å RNAP RNAP II 16/19 kDa polypeptide
1QKL SOLUTIONNMR Eukaryote Homo sapiens Hrpabc14.4, essential subunit of human RNA polymerases I, II and III 10542096 RNAP RNAP II 14.4 kDa polypeptide
2F3I SOLUTIONNMR Eukaryote Homo sapiens Solution structure of a subunit of RNA polymerase II 16632472 RNAP RNAP I, II, and III 17.1 kDa polypeptide
4LT6 XRD Eukaryote Homo sapiens Crystal structure of human poly(A) polymerase gamma 24076191 2.79 Å RNAP Poly(A) polymerase gamma 3AT[ 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE ] CA
3NR5 XRD Eukaryote Homo sapiens Crystal structure of human MAF1 20887893 1.55 Å TF MAF1
1J2X XRD Eukaryote Homo sapiens Crystal structure of RAP74 C-terminal domain complexed with FCP1 C-terminal peptide 12591941 2.00 Å TF TFIIF-alpha subunit,FCP1 SO4 ZN
2K7L SOLUTIONNMR Eukaryote Homo sapiens NMR structure of a complex formed by the C-terminal domain of human RAP74 and a phosphorylated peptide from the central domain of the FCP1 19215094 TF TFIIF Subunit RAP74,FCP1
1ONV SOLUTIONNMR Eukaryote Homo sapiens NMR structure of a complex containing the TFIIF subunit RAP74 and the RNAP II CTD phosphatase FCP1 12732728 TF TFIIF Subunit RAP74,FCP1
4RGW XRD Eukaryote Homo sapiens Crystal structure of a TAF1-TAF7 complex in human TFIID 25412659 2.30 Å TF TFIID subunit 1/7 GOL
5FUR EM Eukaryote Homo sapiens Structure of human TFIID-IIA bound to core promoter DNA 27007846 8.50 Å TF TBP,TFIIA Subunit 1/2,TFIID Sununit 1/2/6/7/8
6MZL EM Eukaryote Homo sapiens Human TFIID canonical state 30442764 23.0 Å TF TFIID,TBP,poly(UNK)
6MZM EM Eukaryote Homo sapiens Human TFIID bound to promoter DNA and TFIIA 30442764 7.50 Å TF TFIID,TFIIA,TBP
6F3T XRD Eukaryote Homo sapiens Crystal structure of the human TAF5-TAF6-TAF9 complex 30510221 2.50 Å TF TFIID TAF5/TAF6/TAF9 CL
6MZD EM Eukaryote Homo sapiens Human TFIID lobe a canonical 30442764 9.80 Å TF TFIID,TBP,poly(UNK)
6MZC EM Eukaryote Homo sapiens Human TFIID BC core 30442764 4.50 Å TF TFIID,poly(UNK)
4M6T XRD Eukaryote Homo sapiens Structure of human PAF1 and LEO1 complex 24038468 2.50 Å TF LEO1,PAF1 SAM[ S-ADENOSYLMETHIONINE ]
5ZYQ XRD Eukaryote Homo sapiens The structure of human PAF1/CTR9 complex 30228257 2.53 Å TF CTR9 homolog,PAF1
3SPA XRD Eukaryote Homo sapiens Crystal structure of human mitochondrial RNA polymerase 21947009 2.50 Å RNAP RNAP(mitochondrial),Nonamer peptide SO4,GOL, CL
4BOC XRD Eukaryote Homo sapiens Structure of mitochondrial RNA polymerase elongation complex 24096365 2.65 Å EC RNAP(mitochondrial)
5OLA XRD Eukaryote Homo sapiens Structure of mitochondrial transcription elongation complex in complex with elongation factor TEFM 29033127 3.90 Å EC TEF(mitochondrial),RNAP(mitochondrial)
6ERP XRD Eukaryote Homo sapiens Structure of the human mitochondrial transcription initiation complex at the LSP promoter 29149603 4.50 Å IC TFA(mitochondrial),RNAP(mitochondrial),Dimethyladenosine transferase 2(mitochondrial)
6ERQ XRD Eukaryote Homo sapiens Structure of the human mitochondrial transcription initiation complex at the HSP promoter 29149603 4.50 Å IC TFA(mitochondrial),RNAP(mitochondrial),Dimethyladenosine transferase 2(mitochondrial)
5ODD SOLUTIONNMR Eukaryote Homo sapiens Human MED26 N-terminal domain (1-92) 26861138 Med Mediator of RNAP II subunit 26
6H02 XRD Eukaryote Homo sapiens Crystal structure of human mediator subunit MED23 30140054 2.80 Å Med Mediator of RNAP II subunit 23,LAMA nanobody NB106
1H3O XRD Eukaryote Homo sapiens Crystal structure of the human TAF4-TAF12 (TAFII135-TAFII20) complex 12237304 2.30 Å TF TFIID 20/15 kDa subunit/135 kDa subunit
2P6V XRD Eukaryote Homo sapiens Structure of tafh domain of the human TAF4 subunit of TFIID 17483474 2.00 Å TF TFIID subunit 4 SO4
2KY6 SOLUTIONNMR Eukaryote Homo sapiens Structure of ARC92VBD/MED25ACID 21378963 Med MED25
2L23 SOLUTIONNMR Eukaryote Homo sapiens NMR structure of the acid (activator interacting domain) of the human mediator MED25 protein 20974256 Med MED25
2L6U SOLUTIONNMR Eukaryote Homo sapiens Solution NMR structure of MED25(391-543) comprising the activator-interacting domain (acid) of human mediator subuniti 25. Northeast structural genomics consortium target HR6188A 21785987 Med MED25
2XNF SOLUTIONNMR Eukaryote Homo sapiens The mediator MED25 activator interaction domain: structure and cooperative binding of VP16 subdomains 21378965 Med MED25
4L1U XRD Eukaryote Homo sapiens Crystal structure of human RTF1 plus3 domain in complex with Spt5 CTR phosphopeptide 24101474 2.42 Å TF RTF1 homolog,Spt5 SO4 GOL
4L1P XRD Eukaryote Homo sapiens Crystal structure of human RTF1 plus3 domain 24101474 2.12 Å TF RTF1 homolog GOL
3U1U XRD Eukaryote Homo sapiens Crystal structure of RNA polymerase-associated protein RTF1 homolog plus-3 domain To be published. 1.80 Å TF RTF1 homolog SO4 GOL UNX
2DB9 SOLUTIONNMR Eukaryote Homo sapiens Solution structure of the plus-3 domain of human KIAA0252 protein To be published. Subunit PAF1/RNA polymerase II complex
2BZE SOLUTIONNMR Eukaryote Homo sapiens NMR structure of human RTF1 plus3 domain. 18184592 TF KIAA0252 protein
3PQ1 XRD Eukaryote Homo sapiens Crystal structure of human mitochondrial poly(A) polymerase (PAPD1) 21292163 3.10 Å RNAP Poly(A) RNA polymerase
1PCF XRD Eukaryote Homo sapiens Human transcription coactivator PC4 C-terminal domain 9360603 1.74 Å TF PC4
2C62 XRD Eukaryote Homo sapiens Crystal structure of the human transcription cofactor PC4 in complex with single-stranded DNA 16415882 1.74 Å TF P15(PC4) SO4
4USG XRD Eukaryote Homo sapiens Crystal structure of PC4 W89Y mutant complex with DNA 25739870 1.97 Å TF P15(PC4)
2Q5E XRD Eukaryote Homo sapiens Crystal structure of human carboxy-terminal domain RNA polymerase II polypeptide a small phosphatase 2 18058037 2.51 Å RNAP SCP2 MG
3O2Q XRD Eukaryote Homo sapiens Crystal structure of the human symplekin-Ssu72-CTD phosphopeptide complex 20861839 2.40 Å TF Symplekin,Ssu72, CTD Serine-5 phosphopeptide PO4
3O2S XRD Eukaryote Homo sapiens Crystal structure of the human symplekin-Ssu72 complex 20861839 2.50 Å TF Symplekin,Ssu72 PO4
4H3H XRD Eukaryote Homo sapiens Crystal structure of a Ternary complex of human symplekin ntd, human Ssu72 and a RNA poymerase II CTD peptide phosphorylated at Ser-7 23070812 2.20 Å TF Symplekin,Ssu72,Pol II CTD peptide PO4
4H3K XRD Eukaryote Homo sapiens Crystal structure of a Ternary complex of human symplekin ntd, human Ssu72 and a RNA polymerase II CTD peptide phosphorylated at Ser-2, Ser-5 and Ser-7 23070812 2.00 Å TF Symplekin,Ssu72,,Hexapeptide PO4
2E5N SOLUTIONNMR Eukaryote Homo sapiens Solution structure of the ELL_N2 domain of target of RNA polymerase II elongation factor ELL2 To be published. TF ELL2
5JW9 XRD Eukaryote Homo sapiens The crystal structure of ELL2 oclludin domain and AFF4 peptide 28134250 2.00 Å EF ELL2,AF4/FMR2 family member 4
4C9B XRD Eukaryote Homo sapiens Crystal structure of eIF4AIII-CWC22 complex 24218557 2.00 Å IF eIF4AIII,CWC22 HOMOLOG PO4 GOL
6YVH XRD Eukaryote Homo sapiens CWC22-CWC27-EIF4A3 complex 32329775 3.19 Å IF eIF4AIII,CWC22 homolog,CWC27 homolog
2HXY XRD Eukaryote Homo sapiens Crystal structure of human apo-eIF4AIII 16931718 3.30 Å IF apo-eIF4AIII
2BZ2 SOLUTIONNMR Eukaryote Homo sapiens Solution structure of NELF E RRM 16898873 EF NELF E
2JX2 SOLUTIONNMR Eukaryote Homo sapiens Solution conformation of RNA-bound NELF-E RRM 18303858 EF NELF E
5OOB XRD Eukaryote Homo sapiens Complex of human nuclear cap-binding complex with m7-GTP and NELF-E C-terminal peptide 29101316 2.79 Å EF NELF E,Nuclear cap-binding protein subunit 1/2 MGT[ 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE ]
2MMY SOLUTIONNMR Eukaryote Homo sapiens Solution structure of the RNA recognition motif of human TAF15 26612539 IF TAF15
3D9I XRD Eukaryote Homo sapiens Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-polymerase II 18550522 1.91 Å TF SCAF8 SO4 GOL NH4
3D9J XRD Eukaryote Homo sapiens Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-polymerase II 18550522 1.60 Å TF SCAF8 SO4 GOL NH4
3D9K XRD Eukaryote Homo sapiens Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxy-terminal domain of RNA-polymerase II 18550522 2.20 Å TF CTD-PEPTIDE,SCAF8 SO4
6EQY SOLUTIONNMR Eukaryote Homo sapiens 4th KOW domain of human hSpt5 30076330 TF Spt5
6ER0 SOLUTIONNMR Eukaryote Homo sapiens 6th KOW domain of human hSpt5 30076330 TF Spt5
2DO3 SOLUTIONNMR Eukaryote Homo sapiens Solution structure of the third KOW motif of transcription elongation factor Spt5 To be published. TF Spt5
2E6Z SOLUTIONNMR Eukaryote Homo sapiens Solution structure of the second KOW motif of human transcription elongation factor Spt5 To be published. TF Spt5
2E+070 SOLUTION NMR Eukaryote Homo sapiens Solution structure of the fifth KOW motif of human transcription elongation factor Spt5 To be published. TF Spt5
3H7H XRD Eukaryote Homo sapiens Crystal structure of the human transcription elongation factor DSIF, hSpt4/hSpt5 (176-273) 19860741 1.55 Å TF Spt4,Spt5 BME[ BETA-MERCAPTOETHANOL ], ZN
5OHO XRD Eukaryote Homo sapiens Crystal structure of the KOWX-KOW4 domain of human DSIF 28892040 1.60 Å EF Spt5 GOL CL
5OHQ XRD Eukaryote Homo sapiens Crystal structure of the KOW6-KOW7 domain of human DSIF 28892040 1.10 Å EF Spt5 CL NA
7A6H EM Eukaryote Homo sapiens Cryo-EM structure of human apo RNA Polymerase III 33558764 3.30 Å RNAP RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPC10,RPABC5,RPAC2,RPABC4,RPC5,RPC4,RPC3,RPC6,RPC7 SF4[ IRON/SULFUR CLUSTER ],ZN ,MG
7AE1 EM Eukaryote Homo sapiens Cryo-EM structure of human RNA Polymerase III elongation complex 1 33558764 2.80Å EC RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPC10,RPABC5,RPAC2,RPABC4,RPC5,RPC4,RPC3,RPC6,RPC7 SF4[ IRON/SULFUR CLUSTER ],ZN ,MG
7AE3 EM Eukaryote Homo sapiens Cryo-EM structure of human RNA Polymerase III elongation complex 3 33558764 3.10Å EC RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPC10,RPABC5,RPAC2,RPABC4,RPC5,RPC4,RPC3,RPC6,RPC7 SF4[ IRON/SULFUR CLUSTER ],ZN ,MG
7AEA EM Eukaryote Homo sapiens Cryo-EM structure of human RNA Polymerase III elongation complex 2 33558764 3.40Å EC RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPC10,RPABC5,RPAC2,RPABC4,RPC5,RPC4,RPC3,RPC6,RPC7 SF4[ IRON/SULFUR CLUSTER ],ZN ,MG
7AST EM Eukaryote Homo sapiens Apo Human RNA Polymerase III 33335104 4.00Å RNAP RPC1,RPC10,RPABC5,RPABC4,RPABC3,RPABC2,RPABC1,RPAC2,RPAC1,RPC9,RPC8,RPC5,RPC4,RPC2,RPC6,RPC3,RPC7-beta
7ASU XRD Eukaryote Homo sapiens Crystal structure of tWHD1 of Rpc5 subunit of human RNA Polymerase III 33335104 2.23Å RNAP RPC5 ZN
7ASV XRD Eukaryote Homo sapiens Crystal structure of tWHD2 of Rpc5 subunit of human RNA Polymerase III 33335104 1.55Å RNAP RPC5 ACT
7D58 EM Eukaryote Homo sapiens cryo-EM structure of human RNA polymerase III in elongating state 33558766 2.90Å EC RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPC10,RPABC5,RPAC2,RPABC4,RPC5,RPC4,RPC3,RPC6,RPC7 SF4[ IRON/SULFUR CLUSTER ],ZN
7D59 EM Eukaryote Homo sapiens cryo-EM structure of human RNA polymerase III in apo state 33558766 3.10Å RNAP RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPC10,RPABC5,RPAC2,RPABC4,RPC5,RPC4,RPC3,RPC6,RPC7 SF4[ IRON/SULFUR CLUSTER ],ZN
7DN3 EM Eukaryote Homo sapiens Structure of Human RNA Polymerase III elongation complex 33674783 3.50Å EC RPC1,RPC2,RPAC1,RPC8,RPC10,RPAC2,RPABC4,RPC6,RPABC1,RPABC2,RPABC3,RPABC5,RPC3,RPC7RPC9,RPC5,RPC4 SF4[ IRON/SULFUR CLUSTER ],ZN ,MG
7DU2 EM Eukaryote Homo sapiens RNA polymerase III EC complex in post-translocation state 33674783 3.35Å EC RPC1,RPC2,RPAC1,RPC8,RPAC2,RPABC4,RPC6,RPABC1,RPABC2,RPABC3,RPABC5,RPC3,RPC7,RPC9,RPC5,RPC4,RPC10 SF4[ IRON/SULFUR CLUSTER ],ZN ,MG
7D59 EM Eukaryote Homo sapiens cryo-EM structure of human RNA polymerase III in apo state 33558766 3.10Å RNAP RNAP SF4,ZN
7D58 EM Eukaryote Homo sapiens cryo-EM structure of human RNA polymerase III in elongating state 33558766 2.90Å EC RNAP SF4,ZN
7FJI EM Eukaryote Homo sapiens human Pol III elongation complex 34675218 3.60Å EC RNAP SF4,ZN
7OB9 EM Eukaryote Homo sapiens Cryo-EM structure of human RNA Polymerase I in elongation state 34887565 2.70Å RNAP RNAP ZN,MG
7OBA EM Eukaryote Homo sapiens Cryo-EM structure of human RNA Polymerase I in complex with RRN3 34887565 3.10Å RNAP RNAP ZN
7OBB EM Eukaryote Homo sapiens Cryo-EM structure of human RNA Polymerase I Open Complex 34887565 3.30Å RNAP RNAP ZN
7LBM EM Eukaryote Homo sapiens Structure of the human Mediator-bound transcription pre-initiation complex 33707221 4.80Å RNAP Isoform 2 of Mediator of RNA polymerase II transcription subunit 16,Mediator of RNA polymerase II transcription subunit 23,subunit 24,subunit 25,RNAP,Transcription initiation factor IIA subunit 1,subunit 2,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIE subunit 1,subunit beta,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,TFIIH basal transcription factor complex helicase XPB subunit,TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 4, p52,General transcription factor IIH subunit 2,General transcription factor IIH subunit 3,General transcription factor IIH subunit 5,CDK-activating kinase assembly factor MAT1,Cyclin-dependent kinase 7,Cyclin-H,Mediator of RNA polymerase II transcription subunit 6,subunit 8,subunit 11,subunit 17,subunit 18,subunit 20,subunit 22,subunit 27,subunit 28,subunit 29,subunit 30,subunit 14,subunit 4,subunit 7,subunit 9,subunit 10,subunit 19,subunit 21,subunit 31,subunit 15 SF4,ZN
7VBB EM Eukaryote Homo sapiens Structure of the post state human RNA Polymerase I Elongation Complex 34671025 2.81 Å EC DNA-directed RNA polymerase I subunit RPA1,RPA2,RPA12,RPA34,RPA43,RPA49,RPAC1,RPAC2,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5, ZN,MG
8A43 EM Eukaryote Homo sapiens Human RNA polymerase I 36271492 4.09 Å RNAP DNA-directed RNA polymerase I subunit RPA1,RPA2,RPA12,RPA34,RPA49,RPAC1,RPAC2,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5
7PZP EM Eukaryote Homo sapiens Mitochondrial DNA dependent RNA polymerase homodimer. 35662414 3.50 Å RNAP DNA-directed RNA polymerase, mitochondrial
7DTI SOLUTION NMR Eukaryote Homo sapiens Solution structure of the complex between RNA polymerase subunit RPB6 and TFIIH p62 PH domain 34268577 RNAP RPABC2,General transcription factor IIH subunit 1
7ZC4 EM Eukaryote Homo sapiens Cryo-EM structure of POLRMT mutant. 35662414 3.24 Å RNAP DNA-directed RNA polymerase, mitochondrial
7ZXE EM Eukaryote Homo sapiens Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC) 36424526 3.50 Å PIC Transcription initiation factor IIB,Transcription initiation factor IIB,Transcription initiation factor IIA subunit 1,2,snRNA-activating protein complex subunit 1,3,4,5 ZN
7FJJ EM Eukaryote Homo sapiens human Pol III pre-termination complex 34675218 3.60Å TC RNAP SF4,ZN
7PZR EM Eukaryote Homo sapiens Cryo-EM structure of POLRMT in free form. 3.00 Å RNAP DNA-directed RNA polymerase, mitochondrial
7YCX EM Eukaryote Homo sapiens, Sus scrofa The structure of INTAC-PEC complex 36869814 4.18 Å RNAP Integrator complex subunit 1,Integrator complex subunit 2,Integrator complex subunit 4,Integrator complex subunit 5,Integrator complex subunit 6,Integrator complex subunit 7,Integrator complex subunit 8,Integrator complex subunit 9,Integrator complex subunit 11,Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform,Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform,DNA-directed RNA polymerase II subunit RPB1,DNA-directed RNA polymerase II subunit RPB1, CTD1, CTD2, CTD3, CTD4,DNA-directed RNA polymerase subunit beta,RPB3,RPB4,RPB7,RPB9,RPB12,DNA-directed RNA polymerase II subunit E,DNA-directed RNA polymerase II subunit F,RPABC3,RPABC5,RNA_pol_L_2 domain-containing protein,Negative elongation factor A,Negative elongation factor B,Negative elongation factor C/D,Negative elongation factor E,Transcription elongation factor SPT4,Transcription elongation factor SPT5, ZN,MN,MG
8BVW EM Eukaryote Homo sapiens, Sus scrofa, unidentified adenovirus, Xenopus laevis RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W) 37148879 4.00 Å PIC General transcription and DNA repair factor IIH helicase subunit XPB,TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 1,General transcription factor IIH subunit 4,General transcription factor IIH subunit 2,General transcription factor IIH subunit 3,General transcription factor IIH subunit 5,CDK-activating kinase assembly factor MAT1,Cyclin-dependent kinase 7,Cyclin-H,DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB9,RPABC3,RPABC5,RPB11-a,RNA polymerase II subunit D,DNA-directed RNA polymerase II subunit E,F,K,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 2,General transcription factor IIE subunit 1,Transcription initiation factor IIE subunit beta,Unassigned peptide, likely XPB,Unassigned peptide, likely TFIIE-beta,Histone H3.2,Histone H4,Histone H2A type 1,Histone H2B 1.1 SF4[IRON/SULFUR CLUSTER],ZN,MG
8BYQ EM Eukaryote Homo sapiens, Sus scrofa, unidentified adenovirus, Xenopus laevis RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W) 37148879 4.10 Å PIC General transcription and DNA repair factor IIH helicase subunit XPB,TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 1,General transcription factor IIH subunit 4,General transcription factor IIH subunit 2,General transcription factor IIH subunit 3,General transcription factor IIH subunit 5,CDK-activating kinase assembly factor MAT1,Cyclin-dependent kinase 7,Cyclin-H,DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB9,RPABC3,RPABC5,RPB11-a,RNA polymerase II subunit D,DNA-directed RNA polymerase II subunit E,F,K,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 2,General transcription factor IIE subunit 1,Transcription initiation factor IIE subunit beta,Unassigned peptide, likely XPB,Unassigned peptide, likely TFIIE-beta,Histone H3.2,Histone H4,Histone H2A type 1,Histone H2B 1.1 SF4[IRON/SULFUR CLUSTER],ZN,MG
8GXQ EM Eukaryote Homo sapiens, Xenopus laevis, Sus scrofa PIC-Mediator in complex with +1 nucleosome (T40N) in MH-binding state 36201575 5.04 Å PIC Transcription initiation factor IIB,Transcription initiation factor TFIID subunit 1,General transcription factor IIE subunit 1,General transcription factor IIF subunit 1,General transcription and DNA repair factor IIH helicase subunit XPD,Histone H3,DNA-directed RNA polymerase subunit,Transcription initiation factor TFIID subunit 2,Transcription initiation factor IIE subunit beta,General transcription factor IIF subunit 2,General transcription factor IIH subunit 1,Histone H4,DNA-directed RNA polymerase subunit beta,General transcription factor IIH subunit 4,RPB3,RPB4,RPB7,RPB9,RPB12,DNA-directed RNA polymerase II subunit E,F,RPABC3,RPABC5,RNA_pol_L_2 domain-containing protein,TATA-box-binding protein,Transcription initiation factor IIA subunit 1,2,3,4,5,6,9,10,11,12,13,7,8,CDK-activating kinase assembly factor MAT1,General transcription factor IIH subunit 3,General transcription factor IIH subunit 2,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription factor IIH subunit 5,Cyclin-dependent kinase 7,Cyclin-H,Mediator of RNA polymerase II transcription subunit 1,4,6,7,8,9,10,11,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,HISTONE H2A.Z,Histone H2B SF4[IRON/SULFUR CLUSTER],ZN,MG
8GXS EM Eukaryote Homo sapiens, Xenopus laevis, Sus scrofa PIC-Mediator in complex with +1 nucleosome (T40N) in H-binding state 36201575 4.16 Å PIC Transcription initiation factor IIB,Transcription initiation factor TFIID subunit 1,General transcription factor IIE subunit 1,General transcription factor IIF subunit 1,General transcription and DNA repair factor IIH helicase subunit XPD,Histone H3,DNA-directed RNA polymerase subunit,Transcription initiation factor TFIID subunit 2,Transcription initiation factor IIE subunit beta,General transcription factor IIF subunit 2,General transcription factor IIH subunit 1,Histone H4,DNA-directed RNA polymerase subunit beta,General transcription factor IIH subunit 4,RPB3,RPB4,RPB7,RPB9,RPB12,DNA-directed RNA polymerase II subunit E,F,RPABC3,RPABC5,RNA_pol_L_2 domain-containing protein,TATA-box-binding protein,Transcription initiation factor IIA subunit 1,2,3,4,5,6,9,10,11,12,13,7,8,CDK-activating kinase assembly factor MAT1,General transcription factor IIH subunit 3,General transcription factor IIH subunit 2,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription factor IIH subunit 5,Cyclin-dependent kinase 7,Cyclin-H,Mediator of RNA polymerase II transcription subunit 1,4,6,7,8,9,10,11,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,HISTONE H2A.Z,Histone H2B SF4[IRON/SULFUR CLUSTER],ZN,MG
8H0V EM Eukaryote Homo sapiens,Komagataella phaffii RNA polymerase II transcribing a chromatosome (type I) 36435862 3.80 Å RNAP DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44,RNA polymerase II subunit B32,RPABC1,RPABC23,RNA polymerase II subunit,RPABC3,RPABC10-beta,RNA polymerase II subunit B12.5,RNA polymerase subunit ABC10-alpha,Histone H3.1,Histone H4,Histone H2A type 1-B/E,Histone H2B type 1-J,Histone H1.2 ZN,MG
6A5R EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-2) of the nucleosome 30287617 8.70 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5L EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA 30287617 5.60 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5O EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome 30287617 9.90 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5P EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome 30287617 7.00 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5T EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome 30287617 6.70 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5U EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA, tilt conformation 30287617 7.60 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6inQ EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA (+1 position) 30287617 6.90 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6IR9 EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex bound with ELF1 and Spt4/5, stalled at SHL(-1) of the nucleosome 30733384 3.80 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J4W EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex bound with ELF1 and Spt4/5, stalled at SHL(-5) of the nucleosome 30733384 7.90 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J4X EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex bound with ELF1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1a) 30733384 4.30 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J4Y EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex bound with ELF1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1b) 30733384 4.30 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J4Z EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome 30733384 4.10 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J51 EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome, weak ELF1 (+1 position) 30733384 4.20 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5/4p ZN MG
6J50 EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome (tilted conformation) 30733384 4.70 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5/4p ZN MG
7XN7 EM Eukaryote Komagataella phaffii RNA polymerase II elongation complex containing Spt4/5, Elf1, Spt6, Spn1 and Paf1C 35981082 3.10 Å RNAP DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44,RNA polymerase II subunit B32,RPABC1,RPABC23,RNA polymerase II subunit,RPABC3,RNA polymerase subunit ABC10-beta,RNA polymerase II subunit B12.5,RNA polymerase subunit ABC10-alpha,Transcription elongation factor 1 homolog,Transcription elongation factor SPT4,Chromatin elongation factor SPT5,Transcription elongation factor Spt6,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II,Component of the Paf1p complex,RNAPII-associated chromatin remodeling Paf1 complex subunit,Leo1,RNAP II-associated protein,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p ZN,MG
8H0W EM Eukaryote Komagataella phaffii, Homo sapiens RNA polymerase II transcribing a chromatosome (type II) 36435862 4.60 Å RNAP DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44,RNA polymerase II subunit B32,RPABC1,RPABC23,RNA polymerase II subunit,RPABC3,RPABC10-beta,RNA polymerase II subunit B12.5,RNA polymerase subunit ABC10-alpha,Histone H3.1,Histone H4,Histone H2A type 1-B/E,Histone H2B type 1-J,Histone H1.2 ZN,MG
7XTD EM Eukaryote Komagataella phaffii, Homo sapiens RNA polymerase II elongation complex transcribing a nucleosome (EC58oct) 35981082 3.90 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44,RNA polymerase II subunit B32,RPABC1,RPABC23,RPABC3,RPABC10-alpha,RPABC10-beta,RNA polymerase II subunit,RNA polymerase II subunit B12.5,Transcription elongation factor 1 homolog,Transcription elongation factor SPT4,Transcription elongation factor SPT5,Transcription elongation factor Spt6,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II,Component of the Paf1p complex,RNAPII-associated chromatin remodeling Paf1 complex subunit,Leo1,RNAP II-associated protein,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p,Histone H3.3,Histone H4,Histone H2A type 1-B/E,Histone H2B type 1-J,FACT complex subunit,FACT complex subunit POB3 ZN,MG
7XSX EM Eukaryote Komagataella phaffii, Homo sapiens RNA polymerase II elongation complex transcribing a nucleosome (EC49) 35981082 3.80 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44,RNA polymerase II subunit B32,RPABC1,RPABC23,RPABC3,RPABC10-alpha,RPABC10-beta,RNA polymerase II subunit,RNA polymerase II subunit B12.5,Transcription elongation factor 1 homolog,Transcription elongation factor SPT4,Transcription elongation factor SPT5,Transcription elongation factor Spt6,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II,Component of the Paf1p complex,RNAPII-associated chromatin remodeling Paf1 complex subunit,Leo1,RNAP II-associated protein,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p,Histone H3.3,Histone H4,Histone H2A type 1-B/E,Histone H2B type 1-J,FACT complex subunit,FACT complex subunit POB3 ZN,MG
7XTI EM Eukaryote Komagataella phaffii, Homo sapiens RNA polymerase II elongation complex transcribing a nucleosome (EC58hex) 35981082 3.90 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44,RNA polymerase II subunit B32,RPABC1,RPABC23,RPABC3,RPABC10-alpha,RPABC10-beta,RNA polymerase II subunit,RNA polymerase II subunit B12.5,Transcription elongation factor 1 homolog,Transcription elongation factor SPT4,Transcription elongation factor SPT5,Transcription elongation factor Spt6,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II,Component of the Paf1p complex,RNAPII-associated chromatin remodeling Paf1 complex subunit,Leo1,RNAP II-associated protein,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p,Histone H3.3,Histone H4,Histone H2A type 1-B/E,Histone H2B type 1-J,FACT complex subunit,FACT complex subunit POB3 ZN,MG
7XT7 EM Eukaryote Komagataella phaffii, Homo sapiens RNA polymerase II elongation complex transcribing a nucleosome (EC49B) 35981082 4.20 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44,RNA polymerase II subunit B32,RPABC1,RPABC23,RPABC3,RPABC10-alpha,RPABC10-beta,RNA polymerase II subunit,RNA polymerase II subunit B12.5,Transcription elongation factor 1 homolog,Transcription elongation factor SPT4,Transcription elongation factor SPT5,Transcription elongation factor Spt6,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II,Component of the Paf1p complex,RNAPII-associated chromatin remodeling Paf1 complex subunit,Leo1,RNAP II-associated protein,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p,Histone H3.3,Histone H4,Histone H2A type 1-B/E,Histone H2B type 1-J,FACT complex subunit,FACT complex subunit POB3 ZN,MG
7XSE EM Eukaryote Komagataella phaffii,Homo sapiens RNA polymerase II elongation complex transcribing a nucleosome (EC42) 35981082 3.60 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44, part of central core,RNA polymerase II subunit B32,RPABC1,RPABC3,RPABC23,RPABC10-alpha,RPABC10-beta,RNA polymerase II subunit,RNA polymerase II subunit B12.5,Transcription elongation factor 1 homolog,Transcription elongation factor SPT4,Transcription elongation factor SPT5,Histone H3.3,Histone H4,Histone H2A type 1-B/E,Histone H2B type 1-J,Transcription elongation factor Spt6,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II,Component of the Paf1p complex,RNAPII-associated chromatin remodeling Paf1 complex subunit,Leo1,RNAP II-associated protein,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p ZN,MG
7XSZ EM Eukaryote Komagataella phaffii,Homo sapiens RNA polymerase II elongation complex transcribing a nucleosome (EC115) 35981082 3.40 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44, RNA polymerase II subunit B32,RPABC1,RPABC23,RNA polymerase II subunit,RPABC3,DNA-directed RNA polymerase subunit,RPABC10-alpha,RPABC10-beta,RNA polymerase II subunit B12.5,Transcription elongation factor 1 homolog,Transcription elongation factor SPT4,Transcription elongation factor SPT5,Transcription elongation factor Spt6,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II,Component of the Paf1p complex,RNAPII-associated chromatin remodeling Paf1 complex subunit,Leo1,RNAP II-associated protein,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p,Histone H3.3,Histone H4,Histone H2A type 1-B/E,Histone H2B type 1-J ZN,MG
7XSE EM Eukaryote Komagataella phaffii,Homo sapiens RNA polymerase II elongation complex transcribing a nucleosome (EC42) 35981082 3.60 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44, part of central core,RNA polymerase II subunit B32,RPABC1,RPABC3,RPABC23,RPABC10-alpha,RPABC10-beta,RNA polymerase II subunit,RNA polymerase II subunit B12.5,Transcription elongation factor 1 homolog,Transcription elongation factor SPT4,Transcription elongation factor SPT5,Histone H3.3,Histone H4,Histone H2A type 1-B/E,Histone H2B type 1-J,Transcription elongation factor Spt6,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II,Component of the Paf1p complex,RNAPII-associated chromatin remodeling Paf1 complex subunit,Leo1,RNAP II-associated protein,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p ZN,MG
2J7N XRD Eukaryote Neurospora crassa Structure of the RNAi polymerase from neurospora crassa 17147473 2.30 Å RNAP RNA-DEPENDENT RNA POLYMERASE GOL,MG
2J7O XRD Eukaryote Neurospora crassa Structure of the RNAi polymerase from neurospora crassa 17147473 3.50 Å RNAP RNA DEPENDENT RNA POLYMERASE MG
7Y7S XRD Eukaryote Neurospora crassa QDE-1 in complex with DNA template, RNA primer and AMPNPP 36039765 2.70 Å RNAP RNA-dependent RNA polymerase ZAN[5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine],PEG[DI(HYDROXYETHYL)ETHER],CA[CALCIUM ION],MG
7Y7P XRD Eukaryote Neurospora crassa QDE-1 in complex with RNA template, RNA primer and AMPNPP 36039765 2.70 Å RNAP RNA-dependent RNA polymerase ZAN[5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine],PEG[DI(HYDROXYETHYL)ETHER],GOL[GLYCEROL],CA[CALCIUM ION]
7Y7Q XRD Eukaryote Neurospora crassa QDE-1 in complex with RNA template, RNA primer and 3'-dGTP 36039765 2.05 Å RNAP RNA-dependent RNA polymerase GTP[GUANOSINE-5'-TRIPHOSPHATE],PEG[ DI(HYDROXYETHYL)ETHER],GOL[GLYCEROL],CA[CALCIUM ION],MG
7Y7R XRD Eukaryote Neurospora crassa QDE-1 in complex with DNA template, RNA primer and 3'-dGTP 36039765 2.10 Å RNAP RNA-dependent RNA polymerase GTP[GUANOSINE-5'-TRIPHOSPHATE],PEG[ DI(HYDROXYETHYL)ETHER],GOL[GLYCEROL],CA[CALCIUM ION],MG
7Y7T XRD Eukaryote Neurospora crassa QDE-1 in complex with 12nt DNA template, ATP and 3'-dGTP 36039765 2.50 Å RNAP RNA-dependent RNA polymerase GTP[GUANOSINE-5'-TRIPHOSPHATE],ATP[ADENOSINE-5'-TRIPHOSPHATE],MG
2RF4 XRD Eukaryote Saccharomyces cerevisiae Crystal structure of the RNA polymerase I subcomplex A14/43 18160037 3.10 Å RNAP RPA4
4C2M XRD Eukaryote Saccharomyces cerevisiae Structure of RNA polymerase I at 2.8 angstrom resolution 24153182 2.80 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN SO4
4C3H XRD Eukaryote Saccharomyces cerevisiae Structure of 14-subunit RNA polymerase I at 3.27 angstrom resolution, crystal form c2-93 24153184 3.27 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
4C3I XRD Eukaryote Saccharomyces cerevisiae Structure of 14-subunit RNA polymerase I at 3.0 angstrom resolution, crystal form c2-100 24153184 3.00 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 MPD[ (4S)-2-METHYL-2,4-PENTANEDIOL ], SO4, ZN ,MG
4C3J XRD Eukaryote Saccharomyces cerevisiae Structure of 14-subunit RNA polymerase I at 3.35 angstrom resolution, crystal form c2-90 24153184 3.35 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
4YM7 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I structure with an alternative dimer hinge 26327374 5.50 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
5G5L XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I-Rrn3 complex at 4.8 a resolution 27418309 4.80 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3 ZN
5LMX XRD Eukaryote Saccharomyces cerevisiae Monomeric RNA polymerase I at 4.9 angstrom resolution 28262097 4.90 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
5M3F XRD Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase I elongation complex at 3.8 angstrom 27842382 3.80 Å EC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 SO4 ZN MG
5M3M XRD Eukaryote Saccharomyces cerevisiae Free monomeric RNA polymerase I at 4.0 angstrom resolution 27842382 4.00 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 SO4 ZN
5M5W XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I open complex 27867008 3.80 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
5M5X XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I elongation complex 1 27867008 4.00 Å EC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
5M5Y XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I elongation complex 2 27867008 4.00 Å EC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
5M64 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I elongation complex with A49 tandem winged helix domain 27867008 4.60 Å EC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
5N5Y XRD Eukaryote Saccharomyces cerevisiae cryo-EM structure of RNA polymerase I in complex with Rrn3 and core factor (orientation III) 28340337 7.70 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 SO4 ZN MG
5N5Z XRD Eukaryote Saccharomyces cerevisiae cryo-EM structure of RNA polymerase I in complex with Rrn3 and core factor (orientation II) 28340337 7.70 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 ZN
5N60 XRD Eukaryote Saccharomyces cerevisiae cryo-EM structure of RNA polymerase I in complex with Rrn3 and core factor (orientation I) 28340337 7.70 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 ZN
5N61 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I initially transcribing complex 28340337 3.40 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 SO4 ZN MG
5OA1 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I pre-initiation complex 28739580 4.40 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 ZN
5W5Y XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I initial transcribing complex 28623663 3.80 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF RRN6/RRN7/RRN11 ZN
5W64 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I initial transcribing complex state 1 28623663 4.20 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF RRN6/RRN7/RRN11 ZN
5W65 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I initial transcribing complex state 2 28623663 4.30 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF RRN6/RRN7/RRN11 ZN
5W66 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase I initial transcribing complex state 3 28623663 3.90 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF RRN6/RRN7/RRN11 ZN
6H67 XRD Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) 30127008 3.60 Å EC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN MG
6H68 XRD Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49 30127008 4.60 Å EC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
6HKO XRD Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP 30913026 3.42 Å EC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,GMPCPP G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ],ZN, MG
6HLQ XRD Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPP 30913026 3.18 Å EC RPA190/RPA135/RPA14/RPA43/RPA12,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ],ZN, MG
6HLR XRD Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused) 30913026 3.18 Å EC RPA190/RPA135/RPA14/RPA43/RPA12,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ],ZN, MG
6HLS XRD Eukaryote Saccharomyces cerevisiae Yeast apo RNA polymerase I* 30913026 3.21 Å RNAP RPA190/RPA135/RPA14/RPA43/RPA12,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 ZN
6RQH EM Eukaryote Saccharomyces cerevisiae RNA polymerase I closed conformation 1 (CC1) 31804486 3.70 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11
6RQL EM Eukaryote Saccharomyces cerevisiae RNA polymerase I closed conformation 2 (CC2) 31804486 2.90 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11
6RQT EM Eukaryote Saccharomyces cerevisiae RNA polymerase I-tWH-Rrn3-DNA To be published. 4.00 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3 ZN
6RRD EM Eukaryote Saccharomyces cerevisiae RNA polymerase I pre-initiation complex DNA opening intermediate 1 31804486 3.10 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 ZN
6RUI EM Eukaryote Saccharomyces cerevisiae RNA polymerase I pre-initiation complex DNA opening intermediate 2 31804486 2.70 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 ZN
6RUO EM Eukaryote Saccharomyces cerevisiae RNA polymerase I open complex conformation 1 31804486 3.50 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 ZN
6RWE EM Eukaryote Saccharomyces cerevisiae RNA polymerase I open complex conformation 2 31804486 3.00 Å IC RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 ZN
5O7X XRD Eukaryote Saccharomyces cerevisiae Rystal structure of S. Cerevisiae core factor at 3.2 angstrom resolution 28340337 3.20 Å TIF RRN6,RRN7,RRN11 SO4 MG
3NFI XRD Eukaryote Saccharomyces cerevisiae Crystal structure of tandem winged helix domain of RNA polymerase I subunit A49 20797630 1.90 Å Subunit RPA49 PE4[ 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL ]
3NFH XRD Eukaryote Saccharomyces cerevisiae Crystal structure of tandem winged helix domain of RNA polymerase I subunit A49 (p4) 20797630 2.17 Å Subunit RPA49
6TPS EM Eukaryote Saccharomyces cerevisiae Early intermediate RNA polymerase I pre-initiation complex - eipic 32139698 3.54 Å IC RPA12/RPA14/RPA34/RPA43/RPA49/RPA135/RPA190,RPAC1/RPAC2,RPABC1/RPABC2/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 ZN MG
5FJ9 EM Eukaryote Saccharomyces cerevisiae cryo-EM structure of yeast apo RNA polymerase III at 4.6 angstrom 26605533 4.60 Å RNAP RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 ZN
5FJ8 EM Eukaryote Saccharomyces cerevisiae cryo-EM structure of yeast RNA polymerase III elongation complex at 3. 9 angstrom 26605533 3.90 Å EC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 ZN
5FJA EM Eukaryote Saccharomyces cerevisiae cryo-EM structure of yeast RNA polymerase III at 4.7 angstrom 26605533 4.65 Å RNAP RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 ZN
6CNB EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase III initial transcribing complex 30083386 4.10 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP ZN
6CNC EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase III open complex 30083386 4.10 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP ZN
6CND EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase III natural open complex (nOC) 30083386 4.80 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP ZN
6CNF EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase III elongation complex 30083386 4.50 Å EC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP ZN
6EU0 EM Eukaryote Saccharomyces cerevisiae RNA polymerase III open pre-initiation complex (OC-PIC) 29345637 4.00 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP ZN MG
6EU1 EM Eukaryote Saccharomyces cerevisiae RNA polymerase III - open DNA complex (OC-POL3) 29345637 3.40 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 ZN MG
6EU2 EM Eukaryote Saccharomyces cerevisiae Apo RNA polymerase III - open conformation (oPOL3) 29345637 3.40 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 ZN MG
6EU3 EM Eukaryote Saccharomyces cerevisiae Apo RNA polymerase III - closed conformation (cPOL3) 29345637 3.30 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 ZN MG
6F40 EM Eukaryote Saccharomyces cerevisiae RNA polymerase III open complex 29345638 3.70 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP ZN
6F41 EM Eukaryote Saccharomyces cerevisiae RNA polymerase III initially transcribing complex 29345638 4.30 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP ZN
6F42 EM Eukaryote Saccharomyces cerevisiae RNA polymerase III closed complex CC1. 29345638 5.50 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP ZN
6F44 EM Eukaryote Saccharomyces cerevisiae RNA polymerase III closed complex CC2. 29345638 4.20 Å IC RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP
6TUT EM Eukaryote Saccharomyces cerevisiae Cryo-EM structure of the RNA polymerase III-MAF1 complex 32066962 3.25 Å RNAP RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,MAF1 ZN
1NT9 XRD Eukaryote Saccharomyces cerevisiae Complete 12-subunit RNA polymerase II 12746495 4.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
1PQV XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II-TFIIS complex 12914699 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIS ZN MG
1WCM XRD Eukaryote Saccharomyces cerevisiae Complete 12-subunit RNA polymerase II at 3.8 angstrom 15591044 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
1Y14 XRD Eukaryote Saccharomyces cerevisiae Crystal structure of yeast subcomplex of RPB4 and RPB7 15591044 2.30 Å RNAP RPB4,RPB7
1Y1V XRD Eukaryote Saccharomyces cerevisiae Refined RNA polymerase II-TFIIS complex 15610738 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIS ZN MG
1Y1W XRD Eukaryote Saccharomyces cerevisiae Complete RNA polymerase II elongation complex 15610738 4.00Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
1Y1Y XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II-TFIIS-DNA/RNA complex 15610738 4.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
1Y77 XRD Eukaryote Saccharomyces cerevisiae Complete RNA polymerase II elongation complex with substrate analogue GMPCPP 15610738 4.50Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
2B63 XRD Eukaryote Saccharomyces cerevisiae Complete RNA polymerase II-RNA inhibitor complex 16341226 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2B8K XRD Eukaryote Saccharomyces cerevisiae 12-subunit RNA polymerase II 16765890 4.15Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
2JA5 XRD Eukaryote Saccharomyces cerevisiae CPD lesion containing RNA polymerase II elongation complex A 17290000 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2JA6 XRD Eukaryote Saccharomyces cerevisiae CPD lesion containing RNA polymerase II elongation complex B 17290000 4.00Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2JA7 XRD Eukaryote Saccharomyces cerevisiae CPD lesion containing RNA polymerase II elongation complex C 17290000 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2JA8 XRD Eukaryote Saccharomyces cerevisiae CPD lesion containing RNA polymerase II elongation complex D 17290000 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2R7Z XRD Eukaryote Saccharomyces cerevisiae Cisplatin lesion containing RNA polymerase II elongation complex 17994106 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 CPT[ Cisplatin ] ZN MG
2R92 XRD Eukaryote Saccharomyces cerevisiae Elongation complex of RNA polymerase II with artificial RDRP scaffold 18004386 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2R93 XRD Eukaryote Saccharomyces cerevisiae Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop 18004386 4.00Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2VUM XRD Eukaryote Saccharomyces cerevisiae Alpha-amanitin inhibited complete RNA polymerase II elongation complex 18552824 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3FKI XRD Eukaryote Saccharomyces cerevisiae 12-subunit RNA polymerase II refined with Zn-SAD data 19289466 3.88Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3H3V XRD Eukaryote Saccharomyces cerevisiae Yeast RNAP II containing poly(A)-signal sequence in the active site 19535338 4.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOU XRD Eukaryote Saccharomyces cerevisiae Complete RNA polymerase II elongation complex I with a T-U mismatch 19560423 3.20Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
3HOV XRD Eukaryote Saccharomyces cerevisiae Complete RNA polymerase II elongation complex II 19560423 3.50Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOW XRD Eukaryote Saccharomyces cerevisiae Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3-uridine 19560423 3.60Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOX XRD Eukaryote Saccharomyces cerevisiae Complete RNA polymerase II elongation complex VI 19560423 3.65Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOY XRD Eukaryote Saccharomyces cerevisiae Complete RNA polymerase II elongation complex VI 19560423 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOZ XRD Eukaryote Saccharomyces cerevisiae Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3-guanine 19560423 3.65Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3I4M XRD Eukaryote Saccharomyces cerevisiae 8-oxoguanine containing RNA polymerase II elongation complex D 19758983 3.70Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3I4N XRD Eukaryote Saccharomyces cerevisiae 8-oxoguanine containing RNA polymerase II elongation complex E 19758983 3.90Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3J0K EM Eukaryote Saccharomyces cerevisiae Orientation of RNA polymerase II within the human VP16-mediator-pol II-TFIIF assembly 21468301 36.0Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3J1N EM Eukaryote Saccharomyces cerevisiae Cryo-EM map of a yeast minimal preinitiation complex interacting with the mediator head module 22579255 16.0Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
3K1F XRD Eukaryote Saccharomyces cerevisiae Crystal structure of RNA polymerase II in complex with TFIIB 19820686 4.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB ZN
3PO2 XRD Eukaryote Saccharomyces cerevisiae Arrested RNA polymerase II elongation complex 21346759 3.30Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 EPE[ 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID?? PEG??DI(HYDROXYETHYL)ETHER] ZN MG ACT[ ACETATE ION ]
3PO3 XRD Eukaryote Saccharomyces cerevisiae Arrested RNA polymerase II reactivation intermediate 21346759 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB EPE[ 4-(2-HYDROXYETHYL)-2-PIPERAZINE ETHANESULFONIC ACID?? PEG??DI(HYDROXYETHYL)ETHER ] ZN MG ACT[ ACETATE ION ]
3QT1 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II variant containing a chimeric RPB9-C11 subunit 21454497 4.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3B XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3C XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3D XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid 22056778 3.40Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3E XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP 22056778 3.40Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ IPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4A3F XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ IPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4A3G XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3I XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II binary complex with DNA 22056778 3.80Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3J XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP 22056778 3.70Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
4A3K XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3L XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4A3M XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP 22056778 3.90Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4A93 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex containing a CPD lesion 22405652 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4BBR XRD Eukaryote Saccharomyces cerevisiae Structure of RNA polymerase II-TFIIB complex 23151482 3.40Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB ZN MG
4BBS XRD Eukaryote Saccharomyces cerevisiae Structure of an initially transcribing RNA polymerase II-TFIIB complex 23151482 3.60Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB ZN MG
4BXX XRD Eukaryote Saccharomyces cerevisiae Arrested RNA polymerase II-Bye1 complex 24003114 3.28Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 ZN MG
4BXZ XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II-Bye1 complex 24003114 4.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 ZN MG
4BY1 XRD Eukaryote Saccharomyces cerevisiae Elongating RNA polymerase II-Bye1 TLD complex soaked with AMPCPP 24003114 3.60Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4BY7 XRD Eukaryote Saccharomyces cerevisiae Elongating RNA polymerase II-Bye1 TLD complex 24003114 3.15Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 EPE[ 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID ] ZN MG
4V1N EM Eukaryote Saccharomyces cerevisiae Architecture of the RNA polymerase II-mediator core transcription initiation complex 25652824 7.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TBP,TFIIF subunit alpha,TFIIF subunit beta ZN MG
4V1O EM Eukaryote Saccharomyces cerevisiae Architecture of the RNA polymerase II-mediator core transcription initiation complex 25652824 9.70Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TBP,TFIIF subunit alpha,TFIIF subunit beta,Mediator of RNA polymerase II transcription subunit 6/8/11/18/20/22 ZN MG
5C3E XRD Eukaryote Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 3.70Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5C44 XRD Eukaryote Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 3.95Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
5C4A XRD Eukaryote Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 4.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5C4X XRD Eukaryote Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 4.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5FMF EM Eukaryote Saccharomyces cerevisiae The P-lobe of RNA polymerase II pre-initiation complex 26483468 6.00Å pIC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,DNA repair helicase RAD25 and SSL2,Transcription elongation factor S-II and DST1,RNA polymerase II pre-Initiation complex(TOA1),TFIIA subunit 2(TOA2), TFIIB(SUA7),TBP,TFIIE subunit alpha(TFA1),TFIIE subunit beta(TFA2),RNA polymerase II pre-Initiation complex (Tfg1),TFIIF subunit beta(TFG2),TFIIB subint 2(TFB2)/5(TFB5),DNA repair helicase RAD3 ZN MG
5FYW EM Eukaryote Saccharomyces cerevisiae Transcription initiation complex structures elucidate DNA opening (OC) 27193681 4.35Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TBP,TFIIF subunit alpha,TFIIF subunit bata,TFIIA large subunit,TFIIA subunit 2,TFIIE subunit alpha,TFIIE subunit beta ZN MG
5FZ5 EM Eukaryote Saccharomyces cerevisiae Transcription initiation complex structures elucidate DNA opening (CC) 27193681 8.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit bata,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta ZN MG
5IP7 XRD Eukaryote Saccharomyces cerevisiae Structure of RNA polymerase II-Tfg1 peptide complex 27193681 3.52Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5IP9 XRD Eukaryote Saccharomyces cerevisiae Structure of RNA polymerase II-TFIIF complex 27193681 3.90Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5OQJ EM Eukaryote Saccharomyces cerevisiae Structure of yeast transcription pre-initiation complex with TFIIH 29088706 4.70Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,DNA repair helicase RAD3,RNA polymerase II transcription factor B subunit 1,RNA polymerase II transcription factor B subunit 2,RNA polymerase II transcription factor B subunit 3,RNA polymerase II transcription factor B subunit 4,RNA polymerase II transcription factor B subunit 5,Suppressor of stem-loop protein 1,DNA repair helicase RAD25 SF4[ IRON/SULFUR CLUSTER ] ZN MG
5OQM EM Eukaryote Saccharomyces cerevisiae Structure of yeast transcription pre-initiation complex with TFIIH and core mediator 29088706 5.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,subunit TFB2,subunit 3,subunit TFB4,subunit TFB5,subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Mediator of RNA polymerase II transcription subunit 6,subunit 8,subunit 11,subunit 17, subunit 18,subunit 20,subunit 22,subunit 4, subunit 7, subunit 9, subunit 10, subunit 14, subunit 19,subunit 21,subunit 31 SF4[ IRON/SULFUR CLUSTER ]ZN MG
5OT2 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex in the presence of 3D-Napht-A 29087308 3.20Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 AHW[ 2-ethyl-7-methoxy-naphthalene ]ZN MG
5SVA EM Eukaryote Saccharomyces cerevisiae Mediator-RNA polymerase II pre-initiation complex 27610567 15.3Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Mediator of RNA polymerase II transcription subunit 6,subunit 8,subunit 11,ubunit 17,subunit 18,subunit 20,subunit 22,subunit 4,subunit 7,subunit 9,subunit 21,subunit 31,DNA repair helicase RAD3,DNA repair helicase RAD25,RNA polymerase II transcription factor B subunit 2,RNA polymerase II transcription factor B subunit 5,Transcription initiation factor IIB,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,TBP,RPB1,Transcription initiation factor TFIID subunit 14 ZN MG
5U5Q XRD Eukaryote Saccharomyces cerevisiae 12 subunit RNA polymerase II at room temperature collected using SFX 28300169 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5VVR EM Eukaryote Saccharomyces cerevisiae Ternary complex of RNA pol II, transcription scaffold and Rad26 29168508 5.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,DNA repair and recombination protein Rad26 ZN MG
5VVS EM Eukaryote Saccharomyces cerevisiae RNA pol II elongation complex 29168508 6.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6GYK EM Eukaryote Saccharomyces cerevisiae Structure of a yeast closed complex (core CC1) 30472190 5.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2 ZN MG
6GYL EM Eukaryote Saccharomyces cerevisiae Structure of a yeast closed complex with distorted DNA (core CCdist) 30472190 4.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Tfa1,Transcription initiation factor IIE subunit beta ZN MG
6GYM EM Eukaryote Saccharomyces cerevisiae Structure of a yeast closed complex with distorted DNA (CCdist) 30472190 6.70Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,General transcription and DNA repair factor IIH helicase subunit XPD,DNA repair helicase RAD3,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,RNA polymerase II transcription factor B subunit 4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,DNA repair helicase RAD25,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha SF4[ IRON/SULFUR CLUSTER ] ZN MG
6I84 EM Eukaryote Saccharomyces cerevisiae Structure of transcribing RNA polymerase II-nucleosome complex 30575770 4.40Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.2,Histone H2A type 1,Histone H4,Histone H2B 1.1 ZN MG
1I3Q XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II crystal form I at 3.1 angstrom resolution 11313498 3.10 Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide ZN MG
1I50 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II crystal form II 11313498 2.80 Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide ZN MN
1I6H XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II enlongation complex 11313499 3.30Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide ZN MG
1K83 XRD Eukaryote Saccharomyces cerevisiae Crystal structure of yeast RNA polymerase II complexed with the inhibitor alpha amanitin 11805306 2.80 Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide ZN MG
1NIK XRD Eukaryote Saccharomyces cerevisiae Wild type RNA polymerase II 12746498 4.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
1R5U XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II TFIIB complex 14963322 4.50Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide,TFIIB ZN MG
1R9S XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II strand separated elongation complex, matched nucleotide 15537538 4.25Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide UTP ZN MG
1R9T XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II strand separated elongation complex, mismatched nucleotide 15537538 3.50Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide ATP ZN MG
1SFO XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II strand separated elongation complex 14963331 3.61Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide ZN MG
1TWA XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II complexed with ATP 15537538 3.20Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide ATP ZN MN
1TWC XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II complexed with GTP 15537538 3.00Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide GTP ZN MN
1TWF XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II complexed with UTP at 2.3 angstrom resolution 15537538 2.30Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide UTP ZN MN
1TWG XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II complexed with CTP 15537538 3.30Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide CTP ZN MN
1TWH XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II complexed with dATP 15537538 3.40Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide ATP ZN MN
2E2H XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex at 5 mm MG2+ with GTP 17129781 3.95Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide GTP ZN MG
2E2I XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex in 5 mm mg+2 with dGTP 17129781 3.41Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide DGT[ 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE ] ZN MG
2E2J XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex in 5 mm mg+2 with GMPCPP 17129781 3.50Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
2L0I SOLUTIONNMR Eukaryote Saccharomyces cerevisiae Solution structure of Rtt103 CTD-interacting domain bound to a Ser2 phosphorylated CTD peptide 20818393 RNAP Regulator of Ty1 transposition protein 103,DNA-directed RNA polymerase CTD
2LO6 SOLUTIONNMR Eukaryote Saccharomyces cerevisiae Structure of Nrd1 CID bound to phosphorylated RNAP II CTD 22892239 CTD Protein NRD1,RPB1
2NVQ XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex in 150 mm mg+2 with dUTP 17129781 2.90Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide DUT[ DEOXYURIDINE-5'-TRIPHOSPHATE ] ZN MG
2NVT XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex in 150 mm mg+2 with GMPCPP 17129781 3.36Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
2NVX XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex in 5 mm mg+2 with dUTP 17129781 3.60Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide DUT[ DEOXYURIDINE-5'-TRIPHOSPHATE ] ZN MG
2NVY XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II form II in 150 mm MN+2 17129781 3.40Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide ZN MN
2NVZ XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with UTP, updated 11/2006 17129781 4.30Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide UTP ZN MG
2YU9 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex in 150 mm mg+2 with UTP 17129781 3.40Å EC RNA polymerase II largest subunit,RNA polymerase II 140 kDa polypeptide,RNA polymerase II 45 kDa polypeptide,RNA polymerases I, II, and III 27 kDa polypeptide,RNA polymerases I, II, and III 23 kDa polypeptide,RNA polymerases I, II, and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide UTP ZN MG
3CQZ XRD Eukaryote Saccharomyces cerevisiae Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin 18538653 2.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,ALPHA-AMANITin ZN
3GTG XRD Eukaryote Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 12mer RNA 19478184 3.78Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3GTJ XRD Eukaryote Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 13mer RNA 19478184 3.42Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3GTK XRD Eukaryote Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 18mer RNA 19478184 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
3GTL XRD Eukaryote Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 13mer with g<>u mismatch 19478184 3.38Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3GTM XRD Eukaryote Saccharomyces cerevisiae Co-complex of backtracked RNA polymerase II with TFIIS 19478184 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription elongation factor S-II ZN MG
3GTP XRD Eukaryote Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 24mer RNA 19478184 3.90Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3GTQ XRD Eukaryote Saccharomyces cerevisiae Backtracked RNA polymerase II complex induced by damage 19478184 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
3K7A XRD Eukaryote Saccharomyces cerevisiae Crystal structure of an RNA polymerase II-TFIIB complex 19965383 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB ZN
3M3Y XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex C 20448203 3.18Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 C7P[ cis-diammine(pyridine)chloroplatinum(II) ] ZN MG
3RZD XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt RNA 21798951 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3RZO XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 4-nt RNA 21798951 3.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
3S14 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 6-nt RNA 21798951 2.85Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S15 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 7-nt RNA 21798951 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S16 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with an 8-nt RNA 21798951 3.24Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3M4O XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex B 20448203 3.57Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 C7P[ cis-diammine(pyridine)chloroplatinum(II) ] ZN MG
3S17 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 9-nt RNA 21798951 3.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S1M XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt RNA (variant 1) 21798951 3.13Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S1N XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt RNA (variant 2) 21798951 3.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S1Q XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt 3-deoxy RNA soaked with ATP 21798951 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ATP ZN MG
3S1R XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt 3-deoxy RNA soaked with GTP 21798951 3.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 GTP ZN MG
3S2D XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt RNA containing a 5Br-U 21798951 3.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S2H XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II initiation complex with a 6-nt RNA containing a 2[prime]-iodo ATP 21798951 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4GWQ XRD Eukaryote Saccharomyces cerevisiae Structure of the mediator head module from S. Cerevisiae in complex with the carboxy-terminal domain (CTD) of RNA polymerase II RPB1 subunit 23071300 4.50Å RNAP Mediator of RNA polymerase II transcription subunit 11,Mediator of RNA polymerase II transcription subunit 17,Mediator of RNA polymerase II transcription subunit 8,Mediator of RNA polymerase II transcription subunit 22,Mediator of RNA polymerase II transcription subuni p18,Mediator of RNA polymerase II transcription subunit 20,Mediator of RNA polymerase II transcription subunit 6,RPB1
4V1M EM Eukaryote Saccharomyces cerevisiae Architecture of the RNA polymerase II-mediator core transcription initiation complex 25652824 6.60Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4X67 XRD Eukaryote Saccharomyces cerevisiae Crystal structure of elongating yeast RNA polymerase II stalled at oxidative cyclopurine DNA lesions. 25605892 4.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
4X6A XRD Eukaryote Saccharomyces cerevisiae Crystal structure of yeast RNA polymerase II encountering oxidative cyclopurine DNA lesions 25605892 3.96Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
4Y52 XRD Eukaryote Saccharomyces cerevisiae Crystal structure of 5-carboxycytosine recognition by RNA polymerase II during transcription elongation. 26123024 3.50Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4Y7N XRD Eukaryote Saccharomyces cerevisiae The structure insight into 5-carboxycytosine recognition by RNA polymerase II during transcription elongation. 26123024 3.30Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
5C4J XRD Eukaryote Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 4.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5LVF SOLUTIONNMR Eukaryote Saccharomyces cerevisiae Solution structure of Rtt103 CTD-interacting domain bound to a Thr4 phosphorylated CTD peptide 28468956 CTD Regulator of Ty1 transposition protein 103
5M9D SOLUTIONNMR Eukaryote Saccharomyces cerevisiae Solution structure of Rtt103 CTD-interacting domain bound to a Ser2ser7 phosphorylated CTD peptide 29073019 CTD Regulator of Ty1 transposition protein 103
5VKL XRD Eukaryote Saccharomyces cerevisiae SPT6 tSH2-RPB1 1476-1500 Ps1493 28826505 2.20Å TF Transcription elongation factor SPT6,RPB1
5VKO XRD Eukaryote Saccharomyces cerevisiae SPT6 tSH2-RPB1 1468-1500 pT1471, Ps1493 28826505 1.80Å TF Transcription elongation factor SPT6,RPB1 IPO[ ISOPROPYL ALCOHOL ]
5W4U XRD Eukaryote Saccharomyces cerevisiae Pol II elongation complex with an N6-methyladenine-containing template 28933854 3.60Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5W51 XRD Eukaryote Saccharomyces cerevisiae Pol II elongation complex with an n6-methyladenine-containing template and a matched UMPNPP 28933854 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 2KH[ 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine ] ZN MG
6BLO XRD Eukaryote Saccharomyces cerevisiae Pol II elongation complex with an abasic lesion at I+1 position 29487211 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6BLP XRD Eukaryote Saccharomyces cerevisiae Pol II elongation complex with an abasic lesion at I+1 position, soaking AMPCPP 29487211 3.20Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[[DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
6BM2 XRD Eukaryote Saccharomyces cerevisiae Pol II elongation complex with an abasic lesion at I-1 position 29487211 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6BM4 XRD Eukaryote Saccharomyces cerevisiae Pol II elongation complex with an abasic lesion at I-1 position,soaking UMPNPP 29487211 2.95Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 2KH[ 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine ] ZN MG
6BQF XRD Eukaryote Saccharomyces cerevisiae Pol II elongation complex with dt-apat I+1, I-1 position 29487211 3.35Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6NPW XRD Eukaryote Saccharomyces cerevisiae Ssu72/Sympk in complex with Ser2/Ser5 phosphorylated peptide 30971428 2.49Å RNAP Symplekin,Ssu72 ortholog(LD40846p),Ser2/Ser5 phosphorylated peptide PO4
6O6C EM Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex arrested at a CPD lesion 31200019 3.10Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UPX XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 32284409 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UPY XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2e 32284409 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
6UPZ XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3 32284409 3.10Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 PPV[ PYROPHOSPHATE ] ZN MG
6UQ0 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4 32284409 3.56Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UQ2 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with Dg in state 1 32284409 3.20Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UQ1 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 6 32284409 3.60Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UQ3 XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 5 32284409 3.47Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 PPV[ PYROPHOSPHATE ] ZN MG
3GTO XRD Eukaryote Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 15mer RNA 19478184 4.00 Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2CKZ XRD Eukaryote Saccharomyces cerevisiae X-ray structure of RNA polymerase III subcomplex C17-C25. 16818233 3.20Å RNAP RNAPIII 18KD polypeptide,RNAPIII 25KD polypeptide
1DZF XRD Eukaryote Saccharomyces cerevisiae RPB5 from S.cerevisiae 10841537 1.90Å RNAP RPABC1
7KED XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with unnatural base dTPT3 34140682 3.60Å EM RNAP ZN,MG
7KEE XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site 34140682 3.45Å EM RNAP WCG [insert into `user` values (1S)-1,4-anhydro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-1-(3-methoxynaphthalen-2-yl)-D-ribitol],ZN,MG
7KEF XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state 34140682 3.89Å EM RNAP WCG [insert into `user` values (1S)-1,4-anhydro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-1-(3-methoxynaphthalen-2-yl)-D-ribitol],ZN,MG
7RIQ XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex scaffold 1 without polyamide 35022237 3.00Å EM RNAP ZN,MG
7RIM XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 35022237 2.90Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7RIQ XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP 35022237 3.30Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7RIW XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex scaffold 2, without polyamide 35022237 3.20Å EM RNAP ZN,MG
7RIX XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2 35022237 3.40Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7RIP XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP 35022237 3.30Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7RIY XRD Eukaryote Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2 soaked with UTP 35022237 3.70Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7ML4 EM Eukaryote Saccharomyces cerevisiae RNA polymerase II initially transcribing complex (ITC) 35051353 3.10Å IC RNAP,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIB,BJ4_G0050160.mRNA.1.CDS.1,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH,Tfb1,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH subunit TFB5,RNA polymerase II transcription factor B subunit 2,Transcription initiation factor IIE subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,TATA-box-binding protein,Transcription initiation factor IIE subunit alpha SF4,MG,ZN
7MEI EM Eukaryote Saccharomyces cerevisiae Composite structure of EC+EC 35051353 3.54Å EC RNAP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta MG,ZN
7MK9 EM Eukaryote Saccharomyces cerevisiae Complex structure of trailing EC of EC+EC (trailing EC-focused) 35051353 3.54Å EC RNAP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta MG,ZN
7MKA EM Eukaryote Saccharomyces cerevisiae Complex structure of trailing EC of EC+EC (trailing EC-focused) 35051353 3.54Å EC RNAP MG,ZN
7ML1 EM Eukaryote Saccharomyces cerevisiae RNA polymerase II pre-initiation complex (PIC2) 35051353 4.00Å PIC RNAP,Tfb1,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit SSL1,RNA polymerase II transcription factor B subunit 2,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH helicase subunit XPB,BJ4_G0050160.mRNA.1.CDS.1,TATA-box-binding protein,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta SF4,MG,ZN
7ML2 EM Eukaryote Saccharomyces cerevisiae RNA polymerase II pre-initiation complex (PIC3) 35051353 3.40Å PIC RNAP,Tfb1,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,BJ4_G0004860.mRNA.1.CDS.1,Tfb1,Tfb4,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH,RNA polymerase II transcription factor B subunit 2,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH helicase subunit XPB,BJ4_G0050160.mRNA.1.CDS.1 SF4,MG,ZN
7ML4 EM Eukaryote Saccharomyces cerevisiae RNA polymerase II initially transcribing complex (ITC) 35051353 3.10Å PIC RNAP,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIB,BJ4_G0050160.mRNA.1.CDS.1,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH,Tfb1,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH subunit TFB5,RNA polymerase II transcription factor B subunit 2,Transcription initiation factor IIE subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,TATA-box-binding protein,Transcription initiation factor IIE subunit alpha SF4,MG,ZN
7O4I EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble 34133942 3.20Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O4J EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex (consensus) 34133942 2.90Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O4K EM Eukaryote Saccharomyces cerevisiae Yeast TFIIH in the contracted state within the pre-initiation complex 34133942 3.60Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O4L EM Eukaryote Saccharomyces cerevisiae Yeast TFIIH in the expanded state within the pre-initiation complex 34133942 3.40Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O72 EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA 34133942 3.40Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O73 EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA 34133942 3.40Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB2,subunit TFB1,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O75 EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA 34133942 3.20Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB2,subunit TFB1,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7ML0 EM Eukaryote Saccharomyces cerevisiae RNA polymerase II pre-initiation complex (PIC1) 35051353 3.00Å PIC RNAP,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,TATA-box-binding protein,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit SSL1,RNA polymerase II transcription factor B subunit 2,General transcription and DNA repair factor IIH subunit TFB5,BJ4_G0050160.mRNA.1.CDS.1,General transcription and DNA repair factor IIH helicase subunit XPB SF4,MG,ZN
7UIG EM Eukaryote Saccharomyces cerevisiae Mediator-PIC Early (Mediator A) 36731470 4.30 Å PIC Mediator of RNA polymerase II transcription subunit 1,subunit 4,subunit 6,subunit 7,subunit 8,subunit 9,subunit 10,subunit 11,subunit 14, subunit 17,subunit 18,subunit 19,subunit 20,subunit 21,subunit 22,subunit 31,DNA-directed RNA polymerase II subunit RPB1
7MKA EM Eukaryote Saccharomyces cerevisiae Structure of EC+EC (leading EC-focused) 3.54 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC5,RPABC4 ZN,MG
7MEI EM Eukaryote Saccharomyces cerevisiae Composite structure of EC+EC 35051353 3.54 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,DNA-directed RNA polymerase II subunit RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta ZN,MG
7MK9 EM Eukaryote Saccharomyces cerevisiae Complex structure of trailing EC of EC+EC (trailing EC-focused) 3.54 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta ZN,MG
8CEN EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with core Mediator 37014863 3.00 Å PIC General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,Mediator of RNA polymerase II transcription subunit 6,Mediator of RNA polymerase II transcription subunit 8,Mediator of RNA polymerase II transcription subunit 11,Mediator of RNA polymerase II transcription subunit 17,Mediator of RNA polymerase II transcription subunit 18,Mediator of RNA polymerase II transcription subunit 20,Mediator of RNA polymerase II transcription subunit 22,Mediator of RNA polymerase II transcription subunit 4,Mediator of RNA polymerase II transcription subunit 7,Mediator of RNA polymerase II transcription subunit 9,Mediator of RNA polymerase II transcrip SF4[IRON/SULFUR CLUSTER],ZN,MG
8CEO EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome 37014863 3.60 Å PIC General transcription and DNA repair factor IIH helicase subunit XPD,TFB1 isoform 1,RNA polymerase II transcription factor B subunit 2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH,General transcription and DNA repair factor IIH helicase subunit XPB,RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC5,RPABC4,Transcription initiation factor IIB,TATA-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,TOA1 isoform 1,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,Mediator of RNA polymerase II transcription subunit 1,4,6,7,8,9,10,11,14,17,18,19,20,21,22,31,Histone H3.2,Histone H4,Histone H2A,Histone H2B SF4[IRON/SULFUR CLUSTER],ZN,MG
7UIL EM Eukaryote Saccharomyces cerevisiae Mediator-PIC Early (Tail A/B Dimer) 36731470 4.30 Å PIC Mediator of RNA polymerase II transcription subunit 1,2,3,5,14,15,16
7ZS9 EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A) 36411341 3.10 Å PIC RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 SF4[IRON/SULFUR CLUSTER],ZN,MG
7ZSA EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B) 36411341 4.00 Å PIC RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 SF4[IRON/SULFUR CLUSTER],ZN,MG
7ZSB EM Eukaryote Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, complex C 36411341 6.60 Å PIC RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 SF4[IRON/SULFUR CLUSTER],ZN,MG
7Z0O EM Eukaryote Saccharomyces cerevisiae Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA 35442737 2.80 Å RNAP Histone H3,Histone H4,RNA polymerase I-specific transcription initiation factor RRN5,RNA polymerase I-specific transcription initiation factor RRN9,RNA polymerase I-specific transcription initiation factor RRN10,Upstream activation factor subunit UAF30,TATA-box-binding protein
6YMW EM Eukaryote Saccharomyces cerevisiae S288C Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex 33278362 3.71 Å IC Mitochondrial transcription factor 1,DNA-directed RNA polymerase, mitochondrial P5E[ [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl] phosphono hydrogen phosphate ] MG
6YMV EM Eukaryote Saccharomyces cerevisiae S288C Cryo-EM structure of yeast mitochondrial RNA polymerase partially-melted transcription initiation complex (PmIC) 33278362 3.10Å IC Mitochondrial transcription factor 1,DNA-directed RNA polymerase, mitochondrial
8BWS EM Eukaryote Saccharomyces cerevisiae S288C Structure of yeast RNA Polymerase III elongation complex at 3.3 A 36977686 3.20 Å RNAP RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPABC5,RPAC2,RPABC4,RPC3,RPC6,RPC7 4QM[(3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol],ZN,MG
7Z2Z EM Eukaryote Saccharomyces cerevisiae S288C Structure of yeast RNA Polymerase III-DNA-Ty1 integrase complex (Pol III-DNA-IN1) at 3.1 A 36977686 3.07 Å RNAP RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPABC5,RPAC2,RPABC4,RPC3,RPC6,RPC7,Integrase, 4QM[(3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol],ZN,MG
7Z0H EM Eukaryote Saccharomyces cerevisiae S288C Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.6 A (focus subunit AC40). 36977686 2.60 Å RNAP RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPABC5,RPAC2,RPABC4,RPC3,RPC6,RPC7,Integrase, ZN,MG
7Z30 EM Eukaryote Saccharomyces cerevisiae S288C Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.9 A (focus subunit C11 terminal Zn-ribbon in the funnel pore). 36977686 2.90 Å RNAP RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPABC5,RPAC2,RPABC4,RPC3,RPC6,RPC7,Integrase, ZN,MG
7Z31 EM Eukaryote Saccharomyces cerevisiae S288C Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.7 A (focus subunit C11, no C11 C-terminal Zn-ribbon in the funnel pore). 36977686 2.76 Å RNAP RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPABC5,RPAC2,RPABC4,RPC3,RPC6,RPC7,Integrase, ZN,MG
7UI9 EM Eukaryote Saccharomyces cerevisiae S288C Core Mediator-PICearly (Copy A) 36731470 3.30 Å Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription elongation factor S-II,Mediator of RNA polymerase II transcription subunit 1,Mediator of RNA polymerase II transcription subunit 4,Mediator of RNA polymerase II transcription subunit 6,Mediator of RNA polymerase II transcription subunit 7,Mediator of RNA polymerase II transcription subunit 8,Mediator of RNA polymerase II transcription subunit 9,Mediator of RNA polymerase II transcription subunit 10,Mediator of RNA polymerase II transcription subunit 11,Mediator of RNA polymerase II transcription subunit 14,Mediator of RNA polymerase II transcription subunit 17,Mediator of RNA polymerase II transcription subunit 18,Mediator of RNA polymerase II transcription subunit 19,Mediator of RNA polymerase II transcription subunit 20,Mediator of RNA polymerase II transcription subunit 21,Mediator of RNA polymerase II transcription subunit 22,Mediator of RNA polymerase II transcription subunit 31,RPB1,RPB2,RPB3,RPB4,RPABC1,RPABC2,RPB7,RPABC3,RPB9,RPABC5,RPB11,RPABC4
7UIO EM Eukaryote Saccharomyces cerevisiae S288C Mediator-PIC Early (Composite Model) 36731470 3.30 Å PIC Mediator of RNA polymerase II transcription subunit 15,1,2,3,4,6,7,8,9,10,11,14,5,16,17,18,19,20,21,22,31,Regulatory protein GAL4,RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription elongation factor S-II ASP[ASPARTIC ACID],THR[THREONINE],ALA[ALANINE],ZN
7UIF EM Eukaryote Saccharomyces cerevisiae S288C Mediator-PIC Early (Core B) 36731470 4.60 Å PIC RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription elongation factor S-II,Mediator of RNA polymerase II transcription subunit 1,4,6,7,8,9,10,11,14,17,18,19,20,21,22,31
7UIC EM Eukaryote Saccharomyces cerevisiae S288C Mediator-PIC Early (Tail A) 36731470 3.70 Å PIC Mediator of RNA polymerase II transcription subunit 2,3,5,14,15,16
7UIK EM Eukaryote Saccharomyces cerevisiae S288C Mediator-PIC Early (Tail A + Upstream DNA & Activator) 36731470 7.70 Å PIC Regulatory protein GAL4,Mediator of RNA polymerase II transcription subunit 2,3,5,14,15,16, ZN
7O3D EM Eukaryote Saccharomyces cerevisiae S288C Cooperation between the intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly 35640611 3.71 Å Domain Transcription elongation factor SPT6
7O3D EM Eukaryote Saccharomyces cerevisiae S288C Cooperation between the intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly 35640611 3.71 Å Domain Transcription elongation factor SPT6
7Z1L EM Eukaryote Saccharomyces cerevisiae W303 Structure of yeast RNA Polymerase III Pre-Termination Complex (PTC) 36070694 2.80 Å PTC RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPC10,RPABC5,RPAC2,RPABC4,RPC5,RPC4,RPC3,RPC6,RPC7 4QM[(3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol],ZN,MG
7Z1O EM Eukaryote Saccharomyces cerevisiae W303 Structure of yeast RNA Polymerase III PTC + NTPs 36070694 2.70 Å PTC RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPC10,RPABC5,RPAC2,RPABC4,RPC5,RPC4,RPC3,RPC6,RPC7 1N7[CHAPSO], ZN,MG
7Z1M EM Eukaryote Saccharomyces cerevisiae W303 Structure of yeast RNA Polymerase III Elongation Complex (EC) 36070694 3.40 Å EC RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPC10,RPABC5,RPAC2,RPABC4,RPC5,RPC4,RPC3,RPC6,RPC7 4QM[(3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol],ZN,MG
7Z1N EM Eukaryote Saccharomyces cerevisiae W303 Structure of yeast RNA Polymerase III Delta C53-C37-C11 36070694 3.90 Å RNAP RPC1,RPC2,RPAC1,RPC9,RPABC1,RPABC2,RPC8,RPABC3,RPABC5,RPAC2,RPABC4,RPC3,RPC6,RPC7 1N7[CHAPSO], ZN,MG
7NKY EM Eukaryote Saccharomyces cerevisiae, Xenopus laevis RNA Polymerase II-Spt4/5-nucleosome-FACT structure 33846633 3.20Å RNAP RNAP,Chromatin elongation factor SPT4,Transcription elongation factor SPT5,FACT complex subunit POB3,FACT complex subunit SPT16,Histone H3.2,Histone H4,Histone H2A type 1,Histone H2B 1.1 MG,ZN
7NKX EM Eukaryote Saccharomyces cerevisiae, Xenopus laevis RNA polymerase II-Spt4/5-nucleosome-Chd1 structure 33846633 2.90Å RNAP RNAP,Histone H3.2,Histone H4,Histone H2A type 1,Histone H2B 1.1,Chromo domain-containing protein 1,Chromatin elongation factor SPT4,Chromatin elongation factor SPT5 ADP,BEF,MG,ZN
7AOE EM Eukaryote Schizosaccharomyces pombe Schizosaccharomyces pombe RNA polymerase I (elongation complex) 33536435 3.90Å EM RNAP ZN
3H0G XRD Eukaryote Schizosaccharomyces pombe RNA polymerase II from schizosaccharomyces pombe 19458260 3.65 Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4PZ6 XRD Eukaryote Schizosaccharomyces pombe PCE1 guanylyltransferase bound to Ser2/Ser5 phosphorylated RNA pol II CTD 24939935 2.41Å RNAP mRNA-capping enzyme subunit alpha, RPB1 GMP
5U0S EM Eukaryote Schizosaccharomyces pombe Cryo-EM structure of the mediator-RNAPII complex 28241144 7.80Å RNAP Mediator complex subunit 6,Mediator complex subunit 8,Mediator complex subunit 17,Mediator complex subunit 18,Mediator complex subunit 20,Mediator complex subunit 11,Mediator complex subunit 22,Mediator complex subunit 14,Mediator complex subunit 4,Mediator complex subunit 7,Mediator complex subunit 21,Mediator complex subunit 31,Mediator complex subunit 27,Mediator complex subunit 9,Mediator complex subunit 19,Mediator complex subunit 10,RPB1, RPB2,RPB3,RPB4, RPB5,RPB6,RPB7,RPB8,RPB9,RPB10, RPB11,RPB12
7AOD EM Eukaryote Schizosaccharomyces pombe Schizosaccharomyces pombe RNA polymerase I (dimer) 33536435 4.50Å RNAP RNAP ZN
6EXV EM Eukaryote Sus scrofa Structure of mammalian RNA polymerase II elongation complex inhibited by alpha-amanitin 29550768 3.60 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
6GMH EM Eukaryote Sus scrofa Structure of activated transcription complex pol II-DSIF-paf-SPT6 30135578 3.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,SPT6,CTR9,LEO1,PAF1,WD repeat-containing protein 61,CDC73,Spt4,Spt5 ZN MG
6GML EM Eukaryote Sus scrofa Structure of paused transcription complex pol II-DSIF-NELF 30135580 3.20Å EC DNA-directed RNA polymerase subunit,beta,C,E,F,RPABC3,RPB9,Negative elongation factor A,Negative elongation factor B,Negative elongation factor C/D,Negative elongation factor E,Spt4,Spt5,D,G ZN MG
6TED EM Eukaryote Sus scrofa Structure of complete, activated transcription complex pol II-DSIF-PAF-SPT6 uncovers allosteric elongation activation by RTF1 32541898 3.10 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,CTR9 homolog, RTF1 homolog,LEO1,RAF1,WD repeat-containing protein 61,Spt4/5/6 ZN MG
7OZP EM Eukaryote Sus scrofa domesticus RNA Polymerase II dimer (Class 3) 34530439 3.80Å RNAP RNAP ZN
7OZN EM Eukaryote Sus scrofa domesticus RNA Polymerase II dimer (Class 1) 34530439 3.50Å RNAP RNAP ZN
7OZO EM Eukaryote Sus scrofa domesticus RNA Polymerase II dimer (Class 2) 34530439 3.80Å RNAP RNAP ZN
7B7U EM Eukaryote Sus scrofa domesticus, Homo sapiens Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2 34021257 2.80Å RNAP RNAP ZN
7NVU EM Eukaryote Sus scrofa, Homo sapiens RNA polymerase II core pre-initiation complex with open promoter DNA 33902107 2.50Å PIC RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,subunit 1,General transcription factor IIE subunit 1,subunit beta MG,ZN
7NVU EM Eukaryote Sus scrofa, Homo sapiens RNA polymerase II core pre-initiation complex with open promoter DNA 33902107 2.50Å PIC RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,subunit 1,General transcription factor IIE subunit 1,subunit beta MG,ZN
7NVZ EM Eukaryote Sus scrofa, Homo sapiens RNA polymerase II pre-initiation complex with closed promoter DNA in distal position 33902107 7.20Å PIC TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 1,subunit 4,subunit 3,subunit 5,subunit 2,General transcription and DNA repair factor IIH helicase subunit XPB,CDK-activating kinase assembly factor MAT1,RNAP,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,subunit 2,Transcription initiation factor IIA subunit 1,General transcription factor IIE subunit 1,subunit beta SF4,MG,ZN
7F4G EM Eukaryote Sus scrofa, Homo sapiens Structure of RPAP2-bound RNA polymerase II 35476980 2.78Å RNAP RNAP ZN
7NVY EM Eukaryote Sus scrofa, Homo sapiens RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position 33902107 7.30Å PIC TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 1,subunit 4,subunit 3,subunit 5,subunit 2,General transcription and DNA repair factor IIH helicase subunit XPB,CDK-activating kinase assembly factor MAT1,RNAP,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,subunit 2,Transcription initiation factor IIA subunit 1,General transcription factor IIE subunit 1,subunit beta,CDK-activating kinase assembly factor MAT1 SF4,MG,ZN
7NW0 EM Eukaryote Sus scrofa, Homo sapiens RNA polymerase II pre-initiation complex with open promoter DNA 33902107 6.60Å PIC TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 1,subunit 4,subunit 3,subunit 5,subunit 2,General transcription and DNA repair factor IIH helicase subunit XPB,CDK-activating kinase assembly factor MAT1,RNAP,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,subunit 2,Transcription initiation factor IIA subunit 1,General transcription factor IIE subunit 1,subunit beta,CDK-activating kinase assembly factor MAT1 ADP,BEF,SF4,MG,ZN
7B0Y EM Eukaryote Sus scrofa, Homo sapiens Structure of a transcribing RNA polymerase II-U1 snRNP complex 33446560 3.60Å RNAP RNAP,U1 small nuclear ribonucleoprotein 70 kDa,U1 small nuclear ribonucleoprotein A,Small nuclear ribonucleoprotein Sm D2,Small nuclear ribonucleoprotein F,Small nuclear ribonucleoprotein E,Small nuclear ribonucleoprotein G,Small nuclear ribonucleoprotein Sm D3,Small nuclear ribonucleoprotein-associated protein,Small nuclear ribonucleoprotein Sm D1 MG,ZN
7OO3 EM Eukaryote Sus scrofa, Homo sapiens Pol II-CSB-CSA-DDB1-UVSSA (Structure1) 34526721 2.80Å RNAP RNAP,DNA excision repair protein ERCC-8,DNA excision repair protein ERCC-6,CSB element,UV-stimulated scaffold protein A,DNA damage-binding protein 1 ZN,MG
7OOB EM Eukaryote Sus scrofa, Homo sapiens Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2) 34526721 2.70Å RNAP RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,DNA excision repair protein ERCC-6,DNA damage-binding protein 1,DNA excision repair protein ERCC-8 ADP,BEF,ZN,MG
7OOP EM Eukaryote Sus scrofa, Homo sapiens Pol II-CSB-CSA-DDB1-UVSSA-PAF-SPT6 (Structure 3) 34526721 2.90Å RNAP RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription elongation factor SPT6,LEO1 helix,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WD repeat-containing protein 61,Parafibromin,DNA excision repair protein ERCC-8,DNA excision repair protein ERCC-6,UV-stimulated scaffold protein A,DNA damage-binding protein 1 ZN,MG
7OPC EM Eukaryote Sus scrofa, Homo sapiens Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4) 34526721 3.00Å RNAP RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription elongation factor SPT6,LEO1 helix,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WD repeat-containing protein 61,Parafibromin,DNA excision repair protein ERCC-8,DNA excision repair protein ERCC-6,UV-stimulated scaffold protein A,DNA damage-binding protein 1,Cullin-4A,E3 ubiquitin-protein ligase RBX1 ZN,MG
7OPD EM Eukaryote Sus scrofa, Homo sapiens Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 5) 34526721 3.00Å RNAP RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription elongation factor SPT6,LEO1 helix,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WD repeat-containing protein 61,Parafibromin,DNA excision repair protein ERCC-8,DNA excision repair protein ERCC-6,UV-stimulated scaffold protein A,DNA damage-binding protein 1,Cullin-4A,E3 ubiquitin-protein ligase RBX1 ZN,MG
8BZ1 EM Eukaryote Sus scrofa, Homo sapiens RNA polymerase II core pre-initiation complex with the proximal +1 nucleosome (cPIC-Nuc10W) 37148879 3.80 Å PIC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB9,RPB11-a,RPABC3,RPABC5,RNA polymerase II subunit D,DNA-directed RNA polymerase II subunit E,F,RNA polymerase II subunit K,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 2,Histone H3.2,Histone H4,Histone H2A type 1,Histone H2B 1.1 ZN,MG
7ZWD EM Eukaryote Sus scrofa, Homo sapiens Structure of SNAPc containing Pol II pre-initiation complex bound to U5 snRNA promoter (CC) 36424526 3.00 Å PIC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB9,RPABC3,RPABC5,RNA polymerase II subunit D,E,F,J,K,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 2,snRNA-activating protein complex subunit 1,snRNA-activating protein complex subunit 3,snRNA-activating protein complex subunit 4,snRNA-activating protein complex subunit 5 ZN,MG
7ZX7 EM Eukaryote Sus scrofa, Homo sapiens Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (CC) 36424526 3.40 Å PIC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB9,RPABC3,RPABC5,RNA polymerase II subunit D,E,F,J,K,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 2,snRNA-activating protein complex subunit 1,snRNA-activating protein complex subunit 3,snRNA-activating protein complex subunit 4,snRNA-activating protein complex subunit 5 ZN,MG
7ZX8 EM Eukaryote Sus scrofa, Homo sapiens Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC) 36424526 3.00 Å PIC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB9,RPABC3,RPABC5,RNA polymerase II subunit D,E,F,J,K,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 2,snRNA-activating protein complex subunit 1,snRNA-activating protein complex subunit 3,snRNA-activating protein complex subunit 4,snRNA-activating protein complex subunit 5 ZN,MG
7OL0 EM Eukaryote Sus scrofa, Homo sapiens, HIV whole-genome vector AA1305#18 Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5) 34265249 3.00Å EC RNAP,Transcription elongation factor SPT5 ZN,MG
7OKX EM Eukaryote Sus scrofa, Homo sapiens, HIV whole-genome vector AA1305#18 Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5)-ELL2-EAF1 (composite structure) 34265249 3.30Å EC RNAP,RNA polymerase II elongation factor ELL2,ELL-associated factor 1,Transcription elongation factor SPT5 ZN,MG
7OKY EM Eukaryote Sus scrofa, Homo sapiens, HIV whole-genome vector AA1305#18 Structure of active transcription elongation complex Pol II-DSIF-ELL2-EAF1(composite structure) 34265249 4.14Å EC RNAP,RNA polymerase II elongation factor ELL2,ELL-associated factor 1,Transcription elongation factor SPT5,Transcription elongation factor SPT5 ZN,MG
7UND EM Eukaryote Sus scrofa, Homo sapiens, Xenopus laevis Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38) 35709268 3.00 Å RNAP DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB8,RPB9,RPB10,RPB11,RPOL4c domain-containing protein,DNA-directed RNA polymerase II subunit E,RPABC2,RNA polymerase II subunit K,Transcription elongation factor SPT6,Transcription elongation factor A protein 1,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein RTF1 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WDR61,Parafibromin,Transcription elongation factor SPT4,Transcription elongation factor SPT5,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 ZN,MG
7UNC EM Eukaryote Sus scrofa, Homo sapiens,Xenopus laevis Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome 35709268 3.00 Å RNAP DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB8,RPB9,RPB10,RPB11,RPOL4c domain-containing protein,DNA-directed RNA polymerase II subunit E,RPABC2,RNA polymerase II subunit K,Transcription elongation factor SPT6,Transcription elongation factor A protein 1,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein RTF1 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WDR61,Parafibromin,Transcription elongation factor SPT5,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 ZN,MG
8H02 XRD Eukaryote Synechococcus elongatus PCC 7942 = FACHB-805 Crystal structure of Synechococcus elongatus PCC 7942 RNA polymerase SI3-tail 1.55 Å RNAP DNA-directed RNA polymerase subunit beta'
8GZG EM Eukaryote Synechocystis sp. PCC 6803 Cryo-EM structure of Synechocystis sp. PCC 6803 RPitc 3.13 Å RNAP DNA-directed RNA polymerase subunit alpha,beta,beta',gamma,omega,RNA polymerase sigma factor SigA ZN,MG
8GZH EM Eukaryote Synechocystis sp. PCC 6803 Cryo-EM structure of Synechocystis sp. PCC 6803 CTP-bound RPitc 2.96 Å RNAP DNA-directed RNA polymerase subunit alpha,beta,beta',gamma,omega,RNA polymerase sigma factor SigA CTP[CYTIDINE-5'-TRIPHOSPHATE],ZN,MG
7AOF EM Eukaryote Vaccinia virus GLV-1h68 Atomic structure of the poxvirus transcription late pre-initiation complex 34556871 2.98Å IC RNAP ZN,MG