| 6X2N |
EM |
Prokaryote |
Escherichia coli |
Mfd-bound E.coli RNA polymerase elongation complex - I state |
33480355 |
3.90Å |
EC |
RNAP,Transcription-repair-coupling factor |
ZN,MG |
| 6X26 |
EM |
Prokaryote |
Escherichia coli |
Mfd-bound E.coli RNA polymerase elongation complex - L1 state |
33480355 |
4.10Å |
EC |
RNAP,Transcription-repair-coupling factor |
ZN |
| 6X43 |
EM |
Prokaryote |
Escherichia coli |
Mfd-bound E.coli RNA polymerase elongation complex - II state |
33480355 |
3.60Å |
EC |
RNAP,Transcription-repair-coupling factor |
ATP,MG,ZN |
| 6X4W |
EM |
Prokaryote |
Escherichia coli |
Mfd-bound E.coli RNA polymerase elongation complex - III state |
33480355 |
3.80Å |
EC |
RNAP,Transcription-repair-coupling factor |
ADP,MG,ZN |
| 6X4Y |
EM |
Prokaryote |
Escherichia coli |
Mfd-bound E.coli RNA polymerase elongation complex - IV state |
33480355 |
3.60Å |
EC |
RNAP,Transcription-repair-coupling factor |
ADP,G,ZN |
| 6X50 |
EM |
Prokaryote |
Escherichia coli |
Mfd-bound E.coli RNA polymerase elongation complex - V state |
33480355 |
3.30Å |
EC |
RNAP,Transcription-repair-coupling factor |
ATP,MG,ZN |
| 1BDF |
XRD |
Prokaryote |
Escherichia coli |
Structure of Escherichia coli RNA polymerase alpha subunit N-terminal domain |
9657722 |
2.50 Å |
Subunit |
RNA polymerase alpha subunit |
|
| 1COO |
XRD |
Prokaryote |
Escherichia coli |
The COOH-terminal domain of RNA polymerase alpha subunit |
7491496 |
|
Subunit |
RNA polymerase alpha subunit |
|
| 1LB2 |
XRD |
Prokaryote |
Escherichia coli |
Structure of the E.Coli alpha C-terminal domain of RNA polymerase in complex with cap and DNA |
12202833 |
3.10 Å |
Subunit |
RNA polymerase alpha subunit,CAP,DNA |
CMP |
| 1XS9 |
XRD |
Prokaryote |
Escherichia coli |
A model of the Ternary complex formed between mara, the alpha-CTD of RNA polymerase and DNA |
15458404 |
|
Subunit |
RNA polymerase alpha subunit,marA |
|
| 3IYD |
XRD |
Prokaryote |
Escherichia coli |
Three-dimensional em structure of an intact activator-dependent transcription initiation complex |
19903881 |
19.8 Å |
IC |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,Catabolite gene activator |
CMP |
| 3K4G |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of E.Coli RNA polymerase alpha subunit C-terminal domain |
20606261 |
2.05 Å |
Subunit |
RNA polymerase alpha |
NA |
| 3LU0 |
XRD |
Prokaryote |
Escherichia coli |
Molecular model of Escherichia coli core RNA polymerase |
20856905 |
11.2 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega subunit |
ZN MG |
| 3N4M |
XRD |
Prokaryote |
Escherichia coli |
E.Coli RNA polymerase alpha subunit C-terminal domain in complex with cap and DNA |
33205945 |
2.99 Å |
Subunit |
RNA polymerase alpha subunit,Catabolite gene activator |
CMP PEG[ DI(HYDROXYETHYL)ETHER ] |
| 3N97 |
XRD |
Prokaryote |
Escherichia coli |
RNA polymerase alpha C-terminal domain (E.Coli) and sigma region 4 (t. Aq. Mutant) bound to (up,-35 element) DNA |
33205945 |
3.25 Å |
Subunit |
RNA polymerase alpha/sigma factor subunit |
ACT[ ACETATE ION ] |
| 4JK1 |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with guanosine tetraphosphate (ppGpp) |
23620295 |
3.90 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma70 subunit |
G4P[ GUANOSINE-5',3'-TETRAPHOSPHATE ] ZN |
| 4JK2 |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with guanosine pentaphosphate (pppGpp) |
23620295 |
4.20 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma70 subunit |
0O2[ guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate) ], ZN |
| 4KMU |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with rifampin |
23679862 |
3.85 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/sigma factor RpoD subunit |
RFP[ RIFAMPICIN ],ZN,MG |
| 4KN4 |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with benzoxazinorifamycin-2b |
23679862 |
3.96 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
1RL[ Benzoxazinorifamycin-2b ],ZN,MG |
| 4KN7 |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with benzoxazinorifamycin-2c |
23679862 |
3.69 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
1RM[ Benzoxazinorifamycin-2c ],ZN,MG |
| 4MEX |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of Escherichia coli RNA polymerase in complex with salinamide A |
24843001 |
3.90 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,Salinamide A |
ZN MG |
| 4MEY |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of Escherichia coli RNA polymerase holoenzyme |
24843001 |
3.95 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
ZN MG |
| 4S20 |
XRD |
Prokaryote |
Escherichia coli |
Structural basis for transcription reactivation by RAPA |
25646438 |
4.70 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega subunit,RAPA |
ZN MG |
| 4XSX |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of CBR 703 bound to Escherichia coli RNA polymerase holoenzyme |
26195788 |
3.71 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
42S[ N'-hydroxy-N-phenyl-3-(trifluoromethyl)benzenecarboximidamide ],ZN,MG |
| 4XSY |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of CBR 9379 bound to Escherichia coli RNA polymerase holoenzyme |
26195788 |
4.01 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,CBR |
42T[ 3-{[(2,6-dichlorophenyl)carbamoyl]amino}-N-hydroxy-N'-phenyl-5-(trifluoromethyl)benzenecarboximidamide], ZN, MG |
| 4XSZ |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of CBR 9393 bound to Escherichia coli RNA polymerase holoenzyme |
26195788 |
3.68 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,CBR |
42U[ 4-[3-(4-fluorophenyl)-1H-pyrazol-4-yl]-N-[2-(piperazin-1-yl)ethyl]-2-(trifluoromethyl)aniline ],ZN,MG |
| 4YG2 |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structur of Escherichia coli RNA polymerase sigma70 holoenzyme |
23389035 |
3.70 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
ZN MG |
| 4YLN |
XRD |
Prokaryote |
Escherichia coli |
E.Coli transcription initiation complex - 17-bp spacer and 4-nt RNA |
25866247 |
5.50 Å |
IC |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
ZN MG |
| 4YLO |
XRD |
Prokaryote |
Escherichia coli |
E.Coli transcription initiation complex - 16-bp spacer and 4-nt RNA |
25866247 |
6.00 Å |
IC |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,spacer,RNA |
ZN MG |
| 4YLP |
XRD |
Prokaryote |
Escherichia coli |
E.Coli transcription initiation complex - 16-bp spacer and 5-nt RNA |
25866247 |
5.50 Å |
IC |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,spacer,RNA |
ZN MG |
| 4ZH2 |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of Escherichia coli RNA polymerase in complex with CBR703 |
26190576 |
4.20 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,CBR703 |
4OB[ N-hydroxy-N'-phenyl-3-(trifluoromethyl)benzenecarboximidamide ],ZN,MG |
| 4ZH3 |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of Escherichia coli RNA polymerase in complex with CBRH16-Br |
26190576 |
4.08 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,CBRH16-Br |
4OD[ N'-(3-bromophenyl)-4-fluoro-N-hydroxy-3-(trifluoromethyl)benzenecarboximidamide ],ZN,MG |
| 4ZH4 |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of Escherichia coli RNA polymerase in complex with CBRP18 |
26190576 |
3.99 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,CBRP18 |
4OE[ 5-(4-fluorophenyl)-4-[4-fluoro-3-(trifluoromethyl)phenyl]-1H-pyrazole ],ZN,MG |
| 5BYH |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of Escherichia coli RNA polymerase - sigma54 holoenzyme complex |
26293966 |
3.76 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma-54 factor subunit |
ZN |
| 5CIZ |
XRD |
Prokaryote |
Escherichia coli |
E.Coli RNA polymerase alpha subunit CTD in complex with cap and DNA: a(5)-tract binding site for alpha CTD |
33205945 |
5.01 Å |
Subunit |
RNA polymerase alpha subunit,CAP,DNA |
CMP |
| 5EZK |
XRD |
Prokaryote |
Escherichia coli |
RNA polymerase model placed by molecular replacement into XRD map of DNA-bound RNA polymerase-sigma 54 holoenzyme complex. |
26293966 |
8.50 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma-54 factor subunit |
|
| 5IPL |
XRD |
Prokaryote |
Escherichia coli |
Sigmas-transcription initiation complex with 4-nt nascent RNA |
27035955 |
3.60 Å |
IC |
RNA polymerase alpha/beta/beta'/omega/sigma factor Rpos subunit,RNA |
DPO[ DIPHOSPHATE ],ZN,MG |
| 5IPM |
XRD |
Prokaryote |
Escherichia coli |
Sigmas-transcription initiation complex with 4-nt nascent RNA |
27035955 |
4.20 Å |
IC |
RNA polymerase alpha/beta/beta'/omega/sigma factor Rpos subunit,RNA |
ZN MG |
| 5IPN |
XRD |
Prokaryote |
Escherichia coli |
Sigmas-transcription initiation complex with 4-nt nascent RNA |
27035955 |
4.61 Å |
IC |
RNA polymerase alpha/beta/beta'/omega/sigma factor Rpos subunit,RNA |
ZN MG |
| 5MS0 |
XRD |
Prokaryote |
Escherichia coli |
Pseudo-atomic model of the RNA polymerase lambda-based antitermination complex solved by cryo-EM |
28452979 |
9.80 Å |
TC |
RNA polymerase alpha/beta/beta'/omega subunit,Antitermination protein NusA/NusB/NusG,30S ribosomal protein S10 |
ZN MG |
| 5NSR |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex |
28579332 |
3.80 Å |
IC |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
|
| 5NSS |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and transcription activator PspF intermedate complex |
28579332 |
5.80 Å |
IC |
RNA polymerase alpha/beta/beta'/omega/ sigma-54 subunit |
|
| 5UAC |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase and rifampin complex, wild-type |
28009073 |
3.80 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
RFP[ RIFAMPICIN ],ZN,MG |
| 5UAG |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase mutant - RpoB D516V |
28009073 |
3.40 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
ZN MG |
| 5UAH |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase and rifampin complex, RpoB D516V mutant |
28009073 |
4.10 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
RFP[ RIFAMPICIN ],ZN,MG |
| 5UAJ |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase RpoB S531L mutant |
28009073 |
3.92 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
ZN MG |
| 5NWT |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of Escherichia coli RNA polymerase - sigma54 holoenzyme complex |
26293966 |
3.76 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/sigma-54 factor subunit |
ZN MG |
| 5UAL |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase and rifampin complex, RpoB s531l mutant |
28009073 |
3.89 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
RFP[ RIFAMPICIN ],ZN,MG |
| 5UAQ |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase RpoB H526Y mutant |
28009073 |
3.60 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
ZN MG |
| 5VSW |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structure of Escherichia coli RNA polymerase and Dksa/ppGpp complex |
29478808 |
4.29 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,TF Dksa,ppGpp |
G4P[ GUANOSINE-5',3'-TETRAPHOSPHATE ],ZN,MG |
| 5VT0 |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli 6s RNA derivative in complex with Escherichia coli RNA polymerase sigma70-holoenzyme |
28988932 |
3.78Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
ZN MG |
| 5W1S |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structure of Escherichia coli RNA polymerase and TraR complex |
29478808 |
3.81 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit,Protein TraR |
ZN MG |
| 5W1T |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structure of Escherichia coli RNA polymerase and Dksa complex |
29478808 |
4.50 Å |
RNAP |
RNA polymerase alpha/beta/beta'/RpoZ/ sigma factor RpoD subunit,TF Dksa |
ZN MG |
| 6ALF |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of crosslinked E.coli RNA polymerase elongation complex |
28318486 |
4.10 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit |
ZN MG |
| 6ALG |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of HK022 Nun - E.coli RNA polymerase elongation complex |
28318486 |
3.70 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit,Transcription termination factor nun |
ZN MG |
| 6ALH |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli RNA polymerase elongation complex |
28318486 |
4.40 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit |
ZN MG |
| 6ASX |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli his pause elongation complex |
29499135 |
3.80 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit |
ZN MG |
| 6BJS |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli his pause elongation complex without pause hairpin |
29499135 |
5.50 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit |
ZN MG |
| 6BYU |
XRD |
Prokaryote |
Escherichia coli |
X-ray crystal structure of Escherichia coli RNA polymerase (RpoB-H526Y) and ppApp complex |
30012465 |
3.60 Å |
RNAP |
RNA polymerase alpha/beta/beta'/RpoZ/ sigma factor RpoD subunit |
ECJ[ (5R)-5-(6-amino-9H-purin-9-yl)-2-({??(S)-hydroxy(phosphonooxy)phosphoryl??oxy}methyl)-4-oxo-4,5-dihydrofuran-3-yl trihydrogen diphosphate ],ZN,MG |
| 6C6S |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli RNA polymerase elongation complex bound with RfaH |
29887376 |
3.70 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit,Transcription antitermination protein RfaH |
ZN MG |
| 6C6T |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli RNA polymerase elongation complex bound with RfaH |
29887376 |
3.50 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit,Transcription antitermination protein RfaH |
ZN MG |
| 6C6U |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli RNA polymerase elongation complex bound with NusG |
29887376 |
3.70 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit,Transcription termination/antitermination protein NusG |
ZN MG |
| 6C9Y |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.Coli RNAP sigma70 holoenzyme |
29581236 |
4.25 Å |
RNAP |
RNA polymerase alpha/beta/beta'/RpoZ/ sigma factor RpoD subunit |
ZN MG |
| 6CA0 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.Coli RNAP sigma70 open complex |
29581236 |
5.75 Å |
RNAP |
RNA polymerase alpha/beta/beta'/RpoZ/ sigma factor RpoD subunit |
ZN MG |
| 6CUX |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RpoB S531L mutant RNA polymerase holoenzyme in complex with kanglemycin A |
30244835 |
4.10 Å |
RNAP |
RNA polymerase alpha/beta/beta'/RpoZ/ sigma factor RpoD subunit |
KNG[ Kanglemycin A ],ZN,MG |
| 6FLP |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli RNA polymerase paused elongation complex without RNA hairpin bound to NusA |
29499136 |
4.10 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit |
ZN MG |
| 6FLQ |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli RNA polymerase paused elongation complex bound to NusA |
29499136 |
3.60 Å |
EC |
RNA polymerase alpha/beta/beta'/omega subunit,Transcription termination/antitermination protein NusA |
ZN MG |
| 6GFW |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme initial transcribing complex |
29932903 |
3.70 Å |
IC |
RNA polymerase alpha/beta/beta'/RpoZ/ sigma-54 factor subunit |
|
| 6GH5 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme transcription open complex |
29932903 |
3.40 Å |
IC |
RNA polymerase alpha/beta/beta'/RpoZ/ sigma-54 factor subunit |
|
| 6GH6 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of bacterial RNA polymerase-sigma54 holoenzyme intermediate partially loaded complex |
29932903 |
4.10 Å |
RNAP |
RNA polymerase alpha/beta/beta'/RpoZ/ sigma-54 factor subunit |
|
| 6JBQ |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of Escherichia coli sigma E transcription initiation complex containing 5nt of RNA |
31131408 |
4.02 Å |
IC |
RNA polymerase alpha/beta/beta'/RpoZ/ sigma-E factor subunit,RNA |
ZN MG |
| 6JNX |
XRD |
Prokaryote |
Escherichia coli |
cryo-EM structure of a Q-engaged arrested complex |
31266960 |
4.08 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/ sigma factor RpoD subunit |
ZN MG |
| 6K4Y |
XRD |
Prokaryote |
Escherichia coli |
Ryoem structure of sigma appropriation complex |
31392983 |
3.79 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega/sigma factor RpoD subunit,anti-sigma factor,transcription regulatory protein motA |
ZN MG |
| 6KJ6 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of Escherichia coli crl transcription activation complex |
31846423 |
3.80 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor Rpos subunit,Sigma factor-binding protein Crl |
ZN MG |
| 6N4C |
XRD |
Prokaryote |
Escherichia coli |
Em structure of the DNA wrapping in bacterial open transcription initiation complex |
To be published. |
17.0 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit |
|
| 6N57 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of Escherichia coli RNAP polymerase bound with TraR in conformation I |
31841111 |
3.70 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Protein TraR |
1N7[ CHAPSO ] ZN MG |
| 6N58 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of Escherichia coli RNAP polymerase bound with TraR in conformation II |
31841111 |
3.78 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Protein TraR |
1N8[ CHAPSO] ZN MG |
| 6N60 |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Microcin J25 (MccJ25) |
30626643 |
3.68 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Microcin J25 |
ZN MG |
| 6N61 |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Capistruin |
30626643 |
3.25 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Capistruin |
EPE[ 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID?? ZN EDO??1,2-ETHANEDIOL ] MG |
| 6OMF |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of sigmas-transcription initiation complex with activator Crl |
31484766 |
3.26 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Sigma factor-binding protein Crl |
ZN MG |
| 6P18 |
XRD |
Prokaryote |
Escherichia coli |
Q21 transcription antitermination complex: loading complex |
31455742 |
3.50 Å |
aTC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Q protein |
ZN MG |
| 6P19 |
XRD |
Prokaryote |
Escherichia coli |
Q21 transcription antitermination complex: loaded complex |
31455742 |
3.80 Å |
aTC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Q protein |
ZN MG |
| 6P1K |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of Escherichia coli sigma70 bound RNAP polymerase holoenzyme |
31841111 |
4.05 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit |
ZN MG |
| 6PB4 |
XRD |
Prokaryote |
Escherichia coli |
The E.Coli Classification-II cap-dependent transcription activation complex with de novo RNA transcript at the state 2 |
32310937 |
4.35 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,CRP |
CMP ZN MG |
| 6PB5 |
XRD |
Prokaryote |
Escherichia coli |
The E.Coli Classification-II cap-dependent transcription activation complex at the state 1 architecture |
32310937 |
4.52 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,CRP |
CMP ZN MG |
| 6PB6 |
XRD |
Prokaryote |
Escherichia coli |
The E.Coli Classification-II cap-dependent transcription activation complex at the state 2 |
32310937 |
4.29 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,CRP |
CMP ZN MG |
| 6PMI |
XRD |
Prokaryote |
Escherichia coli |
Sigm28-transcription initiation complex with specific promoter at the state 1 |
32484956 |
3.86 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor FliA subunit |
ZN MG |
| 6PMJ |
XRD |
Prokaryote |
Escherichia coli |
Sigm28-transcription initiation complex with specific promoter at the state 2 |
32484956 |
3.91 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor FliA subunit |
ZN MG |
| 6PSQ |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase closed complex (TRPc) with TraR and rpsT P2 promoter |
32160514 |
3.40 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Protein TraR |
1N7[ CHAPSO ],ZN,MG |
| 6PSR |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1) with TraR and rpsT P2 promoter |
32160514 |
3.40 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Protein TraR |
1N7[ CHAPSO ],ZN,MG |
| 6PSS |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5a) with TraR and mutant rpsT P2 promoter |
32160514 |
3.50 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Protein TraR |
ZN MG |
| 6PST |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5b) with TraR and mutant rpsT P2 promoter |
32160514 |
3.00 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Protein TraR |
1N7[ CHAPSO ],ZN,MG |
| 6PSU |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi2) with TraR and rpsT P2 promoter |
32160514 |
3.90 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Protein TraR |
1N7[ CHAPSO ],ZN,MG |
| 6PSV |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase promoter unwinding intermediate (TpreRpo) with TraR and rpsT P2 promoter |
32160514 |
3.50 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Protein TraR |
1N7[ CHAPSO ],ZN,MG |
| 6PSW |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase promoter unwinding intermediate (TRpo) with TraR and rpsT P2 promoter |
32160514 |
3.70 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,Protein TraR |
1N7[ CHAPSO ],ZN,MG |
| 6R9B |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage |
32039758 |
3.80 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omaga subunit,Overcome Classificationical restriction gp0.3 |
|
| 6R9G |
XRD |
Prokaryote |
Escherichia coli |
Structural basis of transcription inhibition by the DNA mimic ocr protein of bacteriophage T7 |
32039758 |
3.70 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omaga subunit,Overcome Classificationical restriction gp0.3 |
|
| 6RH3 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.Coli RNA polymerase elongation complex bound to CTP substrate |
31103420 |
3.60 Å |
EC |
RNA polymerase alpha/beta/beta'/omaga subunit |
CTP ZN MG |
| 6RI7 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.Coli RNA polymerase elongation complex bound to GreB transcription factor |
31103420 |
3.90 Å |
EC |
RNA polymerase alpha/beta/beta'/omaga subunit,Transcription elongation factor GreB |
ZN MG |
| 6RI9 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.Coli RNA polymerase backtracked elongation complex in non-swiveled state |
31103420 |
3.70 Å |
EC |
RNA polymerase alpha/beta/beta'/omaga subunit |
ZN MG |
| 6Rin |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.Coli RNA polymerase backtracked elongation complex bound to GreB transcription factor |
31103420 |
3.70 Å |
EC |
RNA polymerase alpha/beta/beta'/omaga subunit,Transcription elongation factor GreB |
ZN MG |
| 6RIP |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.Coli RNA polymerase backtracked elongation complex in swiveled state |
31103420 |
3.40 Å |
EC |
RNA polymerase alpha/beta/beta'/omaga subunit |
ZN MG |
| 7KHB |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase and rrnBP1 promoter open complex |
33483500 |
3.53 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit |
1N7[ CHAPSO ] ZN MG |
| 7KHI |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase and rrnBP1 promoter complex with Dksa/ppGpp |
33483500 |
3.62 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit,RNA polymerase-binding transcription factor Dksa |
1N7[ CHAPSO ] G4P[ GUANOSINE-5',3'-TETRAPHOSPHATE ],ZN,MG |
| 7KHC |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase and rrnBP1 promoter closed complex |
33483500 |
4.14 Å |
IC |
RNA polymerase alpha/beta/beta'/omaga/sigma factor RpoD subunit |
1N7[ CHAPSO ] POP[ PYROPHOSPHATE 2- ],ZN,MG |
| 2AUK |
XRD |
Prokaryote |
Escherichia coli |
Structure of E.Coli RNA polymerase beta' G/G' insert |
16154587 |
2.30 Å |
Subunit |
RNA polymerase beta' subunit |
|
| 2LMC |
XRD |
Prokaryote |
Escherichia coli |
Structure of T7 transcription factor Gp2-E.Coli RNAP jaw domain complex |
22819324 |
|
Subunit |
RNA polymerase beta' subunit,Bacterial RNA polymerase inhibitor |
|
| 4IQZ |
XRD |
Prokaryote |
Escherichia coli |
The crystal structure of a large insert in RNA polymerase (Rpoc) subunit from E.Coli |
To be published. |
2.10 Å |
Subunit |
RNA polymerase beta' subunit |
IOD[ IODIDE ION ], NA |
| 1SIG |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of a sigma70 subunit fragment from Escherichia coli RNA polymerase |
8858155 |
2.60 Å |
Subunit |
RNA polymerase Sigma-70 subunit |
|
| 1TLH |
XRD |
Prokaryote |
Escherichia coli |
T4 asia bound to sigma70 region 4 |
15257291 |
|
Subunit |
10 kDa anti-sigma factor,RNA polymerase sigma factor RpoD |
|
| 2P7V |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of the Escherichia coli regulator of sigma 70, Rsd, in complex with sigma 70 domain 4 |
17681541 |
2.60 Å |
Subunit |
Regulator of sigma D,RNA polymerase sigma factor RpoD |
MG |
| 5TBZ |
XRD |
Prokaryote |
Escherichia coli |
E.Coli RNA polymerase complexed with NusG |
27899640 |
7.00 Å |
RNAP |
RNA polymerase alpha/beta/beta' subunit,Transcription termination/antitermination protein NusG |
|
| 6AWB |
XRD |
Prokaryote |
Escherichia coli |
Structure of 30s ribosomal subunit and RNA polymerase complex in non-rotated state |
29027901 |
6.70 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega subunit,30S ribosomal protein |
|
| 6AWC |
XRD |
Prokaryote |
Escherichia coli |
Structure of 30s ribosomal subunit and RNA polymerase complex in rotated state |
29027901 |
7.90 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega subunit,30S ribosomal protein |
|
| 6AWD |
XRD |
Prokaryote |
Escherichia coli |
Structure of 30s (S1 depleted) ribosomal subunit and RNA polymerase complex |
29027901 |
8.10 Å |
RNAP |
RNA polymerase alpha/beta/beta'/omega subunit,30S ribosomal protein |
|
| 3T72 |
XRD |
Prokaryote |
Escherichia coli |
Phob(e)-sigma70(4)-(RNAP-betha-flap-tip-helix)-dna transcription activation sub-complex |
21829166 |
4.33 Å |
RNAP |
Phosphate regulon transcriptional regulatory protein phoB,RNA polymerase beta/sigma factor RpoD subunit |
|
| 4JKR |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of E.Coli RNA polymerase in complex with ppGpp |
23623685 |
4.20 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD subunit |
G4P[ GUANOSINE-5',3'-TETRAPHOSPHATE ], SR[ STRONTIUM ION], ZN |
| 4LJZ |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure analysis of the E.coli holoenzyme |
24218560 |
3.59 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD subunit |
ZN MG |
| 4LK0 |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure analysis of the E.coli holoenzyme/T7 Gp2 complex |
24218560 |
3.91 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD subunit,Bacterial RNA polymerase inhibitor |
ZN MG |
| 4LLG |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure analysis of the E.coli holoenzyme/Gp2 complex |
24218560 |
3.79 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD subunit,Bacterial RNA polymerase inhibitor |
ZN MG |
| 4YFK |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase in complex with squaramide compound 8 |
25798859 |
3.57 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD subunit |
4C6[ 3,5-dimethyl-N-{2-??4-(4-methylbenzyl)piperidin-1-yl??-3,4-dioxocyclobut-1-en-1-yl}-1,2-oxazole-4-sulfonamide ],ZN,MG |
| 4YFN |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase in complex with squaramide compound 14 |
25798859 |
3.82 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD subunit |
4C2[ N-[3,4-dioxo-2-(4-{[4-(trifluoromethyl)benzyl]amino}piperidin-1-yl)cyclobut-1-en-1-yl]-3,5-dimethyl-1,2-oxazole-4-sulfonamide ],ZN,MG |
| 4YFX |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase in complex with myxopyronin B |
25798859 |
3.84 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD subunit |
4C4[ Myxopyronin B],ZN,MG |
| 6B6H |
XRD |
Prokaryote |
Escherichia coli |
The cryo-EM structure of a bacterial Classification L transcription activation complex |
29146813 |
3.90 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD subunit,CRP |
CMP ZN MG |
| 4LK1 |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure analysis of the E.coli holoenzyme |
24218560 |
3.84 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD subunit |
ZN MG |
| 6GOV |
XRD |
Prokaryote |
Escherichia coli |
Structure of the RNA polymerase lambda-based antitermination complex |
30795892 |
3.70 Å |
Atc |
Transcription termination/antitermination protein NusA/NusB/NusG,Antitermination protein N,30S ribosomal protein S10,DNA-directed RNA polymerase alpha/beta/beta'/omega subunit |
ZN MG |
| 6UTY |
EM |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a mismatching CTP ('Old' crystal soaked with CTP for 30 minutes) |
32829286 |
4.15 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
CTP ZN MG |
| 6UU4 |
EM |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 3-nt RNA ('old' crystal soaked with GTP and dinucleotide Gpa for 30 minutes) |
32829286 |
4.30 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
GTP ZN MG |
| 6UU5 |
XRD |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 6-nt RNA ('old' crystal soaked with GTP, UTP, CTP, and dinucleotide Gpa for 30 minutes) |
32829286 |
.40 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
DPO[ DIPHOSPHATE ],ZN,MG |
| 6UU6 |
XRD |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 4-nt RNA and a UTP ('old' crystal soaked with UTP, ddCTP, and dinucleotide apg for 30 minutes) |
32829286 |
4.20 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
UTP,ZN,MG,DOC[ 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE ] |
| 6UU7 |
EM |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 6-nt RNA and an NTP ('old' crystal soaked with UTP, CTP, ddGTP, and dinucleotide ApG for 30 minutes) |
32829286 |
4.40 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
DG3[ 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE ],DDG[ 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE ],ZN,MG |
| 6UUA |
EM |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a mismatching CTP ('fresh' crystal soaked with CTP for 2 hours) |
32829286 |
4.00 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
CTP ZN MG |
| 6UUB |
EM |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a mismatching UTP ('fresh' crystal soaked with UTP for 2 hours) |
32829286 |
3.96 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
UTP ZN MG |
| 6UUC |
EM |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 3-nt RNA and a mismatching ATP ('fresh' crystal soaked with ATP for 2 hours) |
32829286 |
4.10 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
ATP ZN MG |
| 6UTZ |
EM |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 6-nt RNA ('fresh' crystal soaked with CTP and UTP for 30 minutes) |
32829286 |
3.80 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
DPO[ DIPHOSPHATE], ZN ,MG |
| 6UU0 |
EM |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 3-nt RNA and a mismatching GTP ('fresh' crystal soaked with GTP for 1 hour) |
32829286 |
3.90 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
GTP ZN MG |
| 6UU1 |
XRD |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 4-nt RNA and a CTP ('fresh' crystal soaked with CTP, GTP, and ddTTP for 30 minutes) |
32829286 |
4.10 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
CTP ZN MG 2DT[ 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE ] |
| 6UU2 |
XRD |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with 3-nt RNA ('old' crystal soaked with GTP and ATP for 30 minutes) |
32829286 |
4.40 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
GTP ZN MG |
| 6UU3 |
XRD |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 4-nt RNA and a CTP ('old' crystal soaked with GTP, ATP, CTP, and ddTTP for 30 minutes) |
32829286 |
4.00 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
D4M[ [(5R)-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-2,5-DIHYDROFURAN-2-YL]METHYL DIHYDROGEN PHOSPHATE ],CTP,ZN,MG |
| 6FI7 |
XRD |
Prokaryote |
Escherichia coli |
E.coli sigma factor s (Rpos) region 4 |
29789383 |
|
Subunit |
RNA polymerase sigma factor Rpos |
|
| 6UTV |
XRD |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 6-nt RNA ('fresh' crystal soaked with CTP, UTP, GTP, and ddATP for 150 seconds) |
32829286 |
3.45 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
DPO[ DIPHOSPHATE ],ZN,MG |
| 6UTW |
XRD |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with a 4-nt RNA ('fresh' crystal) |
32829286 |
3.85 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
DPO[ DIPHOSPHATE ],ZN,MG |
| 6UTX |
XRD |
Prokaryote |
Escherichia coli |
E.Coli sigma-S transcription initiation complex with an empty bubble ('old' crystal) |
32829286 |
4.05 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
ZN MG |
| 6VJS |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase and ureidothiophene-2-carboxylic acid complex |
32886885 |
4.02 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD |
QZY[ 3-{[benzyl(ethyl)carbamoyl]amino}-5-(4-phenoxyphenyl)thiophene-2-carboxylic acid ],ZN,MG |
| 6XAS |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.Coli rho-dependent transcription pre-termination complex |
33296676 |
3.80 Å |
Ptc |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusA,Transcription termination factor Rho |
ZN MG |
| 6XAV |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.Coli rho-dependent transcription pre-termination complex bound with NusG |
33296676 |
7.70 Å |
pTC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG,antitermination protein NusA,Transcription termination factor Rho |
ZN MG |
| 6TQO |
XRD |
Prokaryote |
Escherichia coli |
Rrn anti-termination complex |
32871103 |
3.80 Å |
aTC |
inositol monophosphatase,inositol-1-monophosphatase,antitermination protein NusA/NusB/NusG,30S ribosomal protein S10/S4,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ZN MG |
| 7ADC |
XRD |
Prokaryote |
Escherichia coli |
Transcription termination intermediate complex 3 delta NusG |
33243850 |
4.00 Å |
TC |
Transcription termination factor Rho,antitermination protein NusA,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ADP[ ADENOSINE-5'-DIPHOSPHATE ],BEF[ BERYLLIUM TRIFLUORIDE ION ],ZN,MG |
| 7ADB |
XRD |
Prokaryote |
Escherichia coli |
Transcription termination intermediate complex 1 delta NusG |
33243850 |
4.40 Å |
TC |
Transcription termination factor Rho,antitermination protein NusA,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ADP[ ADENOSINE-5'-DIPHOSPHATE ],BEF[ BERYLLIUM TRIFLUORIDE ION ],ZN,MG |
| 7ADE |
XRD |
Prokaryote |
Escherichia coli |
Transcription termination complex IVa |
33243850 |
4.20 Å |
TC |
Transcription termination factor Rho,antitermination protein NusA,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ADP[ ADENOSINE-5'-DIPHOSPHATE ],BEF[ BERYLLIUM TRIFLUORIDE ION ],ZN,MG |
| 7ADD |
XRD |
Prokaryote |
Escherichia coli |
Transcription termination intermediate complex IIIa |
33243850 |
4.30 Å |
TC |
Transcription termination factor Rho,antitermination protein NusA,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ADP[ ADENOSINE-5'-DIPHOSPHATE ],BEF[ BERYLLIUM TRIFLUORIDE ION ],ZN,MG |
| 6Z9T |
XRD |
Prokaryote |
Escherichia coli |
Transcription termination intermediate complex 5 |
33243850 |
4.10 Å |
TC |
Transcription termination factor Rho,antitermination protein NusA,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ADP[ ADENOSINE-9'-DIPHOSPHATE ],BEF[ BERYLLIUM TRIFLUORIDE ION ],DA[ 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE ],DT[ THYMIDINE-5'-MONOPHOSPHATE ],ZN,MG |
| 6Z9S |
XRD |
Prokaryote |
Escherichia coli |
Transcription termination intermediate complex 4 |
33243850 |
4.40 Å |
TC |
Transcription termination factor Rho,antitermination protein NusA,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ADP[ ADENOSINE-5'-DIPHOSPHATE ],BEF[ BERYLLIUM TRIFLUORIDE ION ],ZN,MG |
| 6Z9P |
EM |
Prokaryote |
Escherichia coli |
Transcription termination intermediate complex 1 |
33243850 |
3.90 Å |
TC |
Transcription termination factor Rho,antitermination protein NusA/NusG,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ADP[ ADENOSINE-9'-DIPHOSPHATE ],DG[ 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE ],BEF[ BERYLLIUM TRIFLUORIDE ION ],ZN,MG |
| 6Z9R |
EM |
Prokaryote |
Escherichia coli |
Transcription termination intermediate complex 3 |
33243850 |
4.10 Å |
TC |
Transcription termination factor Rho,antitermination protein NusA/NusG,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ADP[ ADENOSINE-9'-DIPHOSPHATE ],DG[ 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE ],BEF[ BERYLLIUM TRIFLUORIDE ION ],ZN,MG |
| 6Z9Q |
EM |
Prokaryote |
Escherichia coli |
Transcription termination intermediate complex 2 |
33243850 |
5.70 Å |
TC |
Transcription termination factor Rho,antitermination protein NusA/NusG,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ADP[ ADENOSINE-5'-DIPHOSPHATE ],BEF[ BERYLLIUM TRIFLUORIDE ION ],ZN,MG |
| 7C17 |
XRD |
Prokaryote |
Escherichia coli |
The cryo-EM structure of E.Coli CueR transcription activation complex with fully duplex promoter DNA |
32989300 |
4.22 Å |
pIC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD,HTH-type transcriptional regulator CueR |
AG ZN MG |
| 6WMU |
XRD |
Prokaryote |
Escherichia coli |
E.Coli RNAPs70-Sspa-gada DNA complex |
33217319 |
3.18 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD,Stringent starvation protein A |
ZN MG |
| 6LDI |
EM |
Prokaryote |
Escherichia coli |
The cryo-EM structure of E.Coli CueR transcription activation complex |
32989300 |
3.69 Å |
pIC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor RpoD,HTH-type transcriptional regulator CueR |
AG ZN MG |
| 6UU9 |
XRD |
Prokaryote |
Escherichia coli |
E.Coli mutant sigma-S transcription initiation complex with an 8-nt RNA ('fresh' mutant crystal soaked with GTP, UTP, CTP, and ddATP for 30 minutes) |
32829286 |
5.40 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/omega/sigma factor Rpos |
2DA[ 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE ],DPO[ DIPHOSPHATE],ZN,MG |
| 7KHE |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase and rrnBP1 promoter pre-open complex with Dksa/ppGpp |
33483500 |
3.58 Å |
Pre-IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/delta/omega/sigma factor RpoD,RNA polymerase-binding transcription factor Dksa |
1N7[ CHAPSO ],G4P[ GUANOSINE-5',3'-TETRAPHOSPHATE ],ZN,MG |
| 6OUL |
XRD |
Prokaryote |
Escherichia coli |
cryo-EM structure of Escherichia coli RNAP polymerase bound to rpsTP2 promoter DNA |
31841111 |
3.40 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/delta/omega/sigma factor RpoD |
1N7[ CHAPSO ],ZN,MG |
| 6UU8 |
EM |
Prokaryote |
Escherichia coli |
E.Coli mutant sigma-S transcription initiation complex with a 7-nt RNA ('fresh' mutant crystal soaked with GTP, UTP, and CTP for 30 minutes) |
32829286 |
4.40 Å |
IC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/delta/omega/sigma factor RpoD |
DPO[ DIPHOSPHATE ],ZN,MG |
| 6N62 |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA |
30626643 |
3.80 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha/beta/beta'/delta/omega/sigma factor RpoD |
ZN MG |
| 7C97 |
XRD |
Prokaryote |
Escherichia coli |
cryo-EM structure of an Escherichia coli RNAP-promoter open complex (Rpo) with Sspa |
|
3.68 Å |
pIC |
Stringent starvation protein A,DNA-directed RNA polymerase subunit alpha/beta/beta'/delta/omega/sigma factor RpoD |
ZN MG |
| 7CHW |
XRD |
Prokaryote |
Escherichia coli |
cryo-EM structure of an Escherichia coli RNAP-promoter open complex (Rpo) |
|
3.58 Å |
pIC |
DNA-directed RNA polymerase subunit alpha/beta/beta'/delta/omega/sigma factor RpoD |
ZN MG |
| 6X7F |
XRD |
Prokaryote |
Escherichia coli |
cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site |
32820061 |
3.50 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6X7K |
XRD |
Prokaryote |
Escherichia coli |
cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site |
32820061 |
3.10 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6X6T |
XRD |
Prokaryote |
Escherichia coli |
Ryo-em structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site |
32820061 |
3.20 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6X9Q |
XRD |
Prokaryote |
Escherichia coli |
cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site |
32820061 |
4.80 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6XDQ |
XRD |
Prokaryote |
Escherichia coli |
cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site |
32820061 |
3.70 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6XDR |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
4.70 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6XGF |
XRD |
Prokaryote |
Escherichia coli |
Scherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
5.00 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6XII |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
7.00 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6VYU |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer |
32820061 |
7.00 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6VYX |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fmet-tRNAs at P-site and E-site |
32820061 |
9.90 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6VYZ |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site |
32820061 |
9.90 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 6VYW |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
7.00 Å |
TTC |
50S ribosomal protein L21,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG/NusA,30S ribosomal protein |
ZN MG |
| 3TBI |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of T4 gp33 bound to E.Coli RNAP beta-flap domain |
To be published. |
3.00 Å |
Subunit |
RNA polymerase-associated protein Gp33,DNA-directed RNA polymerase subunit beta |
|
| 2H27 |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of Escherichia coli sigma E region 4 bound to its-35 element DNA |
16903784 |
2.30 Å |
Subunit |
RNA polymerase Sigma E factor |
MPD[ (4S)-2-METHYL-2,4-PENTANEDIOL] |
| 1OR7 |
EM |
Prokaryote |
Escherichia coli |
Crystal structure of Escherichia coli sigma E with the cytoplasmic domain of its anti-sigma RseA |
12718891 |
2.00 Å |
Subunit |
RNA polymerase sigma-E factor,Sigma-E factor negative regulatory protein |
|
| 6ZTL |
XRD |
Prokaryote |
Escherichia coli |
E.Coli 70s-RNAP expressome complex in collided state bound to NusG |
32820062 |
3.50 Å |
RNAP |
30S ribosomal protein,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
PHE[ PHENYLALANINE ],ZN,MG |
| 6VZ3 |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex d2 (TTC-d2) containing mRNA with a 27 nt long spacer |
32820061 |
8.90 Å |
TTC |
30S ribosomal protein,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
ZN MG |
| 6XIJ |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex a (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
8.00 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 6VYR |
XRD |
Prokaryote |
Escherichia coli |
Erichia coli transcription-translation complex a1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
3.80 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 6VYQ |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex a1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
3.70 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 6VYS |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
3.70 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 6VZJ |
XRD |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex a1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG |
32820061 |
4.10 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 6VU3 |
XRD |
Prokaryote |
Escherichia coli |
Cryo-EM structure of Escherichia coli transcription-translation complex a (TTC-A) containing mRNA with a 12 nt long spacer |
32820061 |
3.70 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 6VYT |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex a2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site |
32820061 |
14.0 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 6VZ5 |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex d3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
8.90 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 6VZ2 |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex d1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
10.0 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 6VYY |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli transcription-translation complex c5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site |
32820061 |
9.90 Å |
TTC |
50S ribosomal protein,30S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega,antitermination protein NusG |
ZN MG |
| 2MT3 |
XRD |
Prokaryote |
Escherichia coli |
Structure of -24 DNA binding domain of sigma 54 from E.coli |
To be published. |
|
Subunit |
RNA polymerase sigma-54 factor |
|
| 6ZU1 |
XRD |
Prokaryote |
Escherichia coli |
E.Coli 70s-RNAP expressome complex in uncoupled state 2 |
32820062 |
3.00 Å |
RNAP |
30S ribosomal protein,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
PHE[ PHENYLALANINE],ZN,MG |
| 6ZTJ |
XRD |
Prokaryote |
Escherichia coli |
E.Coli 70s-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA) |
32820062 |
3.40 Å |
RNAP |
30S ribosomal protein,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
PHE[ PHENYLALANINE],ZN,MG |
| 6ZTN |
XRD |
Prokaryote |
Escherichia coli |
E.Coli 70s-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA) |
32820062 |
3.90 Å |
RNAP |
30S ribosomal protein,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
PHE[ PHENYLALANINE],ZN,MG |
| 6ZTO |
XRD |
Prokaryote |
Escherichia coli |
E.Coli 70s-RNAP expressome complex in uncoupled state 1 |
32820062 |
3.00 Å |
RNAP |
30S ribosomal protein,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
PHE[ PHENYLALANINE],ZN,MG |
| 6ZTP |
XRD |
Prokaryote |
Escherichia coli |
E.Coli 70s-RNAP expressome complex in uncoupled state 6 |
32820062 |
3.00 Å |
RNAP |
30S ribosomal protein,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
PHE[ PHENYLALANINE],ZN,MG |
| 6ZTM |
XRD |
Prokaryote |
Escherichia coli |
E.Coli 70s-RNAP expressome complex in collided state without NusG |
32820062 |
3.30 Å |
RNAP |
30S ribosomal protein,50S ribosomal protein,DNA-directed RNA polymerase subunit alpha/beta/beta'/omega |
PHE[ PHENYLALANINE],ZN,MG |
| 1DDE |
XRD |
Prokaryote |
Escherichia coli |
Structure of the DnaG catalytic core |
10741967 |
1.70 Å |
RNAP |
DNA PRIMASE |
Y1[ YTTRIUM ION ] |
| 1DD9 |
XRD |
Prokaryote |
Escherichia coli |
Structure of the DnaG catalytic core |
10741967 |
1.60 Å |
RNAP |
DNA PRIMASE |
SR[ STRONTIUM ION ] |
| 1EQN |
XRD |
Prokaryote |
Escherichia coli |
E.coli primase catalytic core |
10873470 |
2.90 Å |
RNAP |
DNA PRIMASE |
|
| 1T3W |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of the E.coli DnaG C-terminal domain (residues 434 to 581) |
15649896 |
2.80 Å |
RNAP |
DNA primase |
ACY[ ACETIC ACID ] |
| 2HAJ |
XRD |
Prokaryote |
Escherichia coli |
Solution structure of the helicase-binding domain of Escherichia coli primase |
17010164 |
|
Subunit |
DNA primase |
|
| 3B39 |
XRD |
Prokaryote |
Escherichia coli |
Structure of the DnaG primase catalytic domain bound to ssDNA |
18193061 |
2.35 Å |
RNAP |
DNA primase |
|
| 6CBR |
XRD |
Prokaryote |
Escherichia coli |
DnaG primase C-terminal domain complex with ssb C-terminal peptide |
To be published. |
1.50 Å |
Subunit |
DNA primase,single-stranded DNA-binding protein chimera |
|
| 6CBS |
XRD |
Prokaryote |
Escherichia coli |
DnaG primase C-terminal domain complex with ssb C-terminal peptide |
To be published. |
1.85 Å |
Subunit |
DNA primase, single-stranded DNA-binding protein chimera |
ZN ACY[ ACETIC ACID ] |
| 6CBT |
XRD |
Prokaryote |
Escherichia coli |
DnaG primase C-terminal domain complex with ssb C-terminal peptide |
To be published. |
2.10 Å |
Subunit |
DNA primase, single-stranded DNA-binding protein chimera |
ZN ACY[ ACETIC ACID ] |
| 3LTI |
XRD |
Prokaryote |
Escherichia coli |
Crystal structure of the Escherichia coli RNA polymerase beta subunit beta2-betai4 domains |
20856905 |
1.60 Å |
Subunit |
DNA-directed RNA polymerase subunit beta |
|
| 4NJC |
XRD |
Prokaryote |
Escherichia coli |
RNA Polymerase interacting protein YkzG from Geobacillus stearothermophilus |
25092033 |
|
Subunit |
Geobacillus stearothermophilus YkzG |
|
| 7D7C |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of gp55-dependent RNA polymerase-promoter open complex
|
33602900 |
3.60Å |
RNAP |
RNAP,gp55 |
ZN,MG |
| 7D7D |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of gp45-dependent transcription activation complex
|
33602900 |
4.50Å |
RNAP |
RNAP,gp55,gp33,DNA polymerase clamp |
ZN,MG |
| 6XLL |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E. coli RNAP-promoter initial transcribing complex with 5-nt RNA transcript (RPitc-5nt) |
33976201 |
2.70Å |
RNAP |
RNAP,RNA polymerase sigma factor RpoD |
1N7[CHAPSO],ZN,MG |
| 6XL5 |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of EcmrR-RNAP-promoter open complex (EcmrR-RPo) |
33976201 |
2.50Å |
RNAP |
RNAP,RNA polymerase sigma factor RpoD,MerR family transcriptional regulator EcmrR |
1N7[CHAPSO],118[TETRAPHENYLANTIMONIUM ION],ZN,MG |
| 6XL9 |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of EcmrR-RNAP-promoter initial transcribing complex with 3-nt RNA transcript (EcmrR RPitc-3nt) |
33976201 |
2.50Å |
IC |
RNAP,RNA polymerase sigma factor RpoD,MerR family transcriptional regulator EcmrR |
118[TETRAPHENYLANTIMONIUM ION],ZN,MG |
| 6XLJ |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of EcmrR-RNAP-promoter initial transcribing complex with 4-nt RNA transcript (EcmrR-RPitc-4nt)
|
33976201 |
2.70Å |
IC |
RNAP,RNA polymerase sigma factor RpoD,MerR family transcriptional regulator EcmrR |
1N7[CHAPSO],118[TETRAPHENYLANTIMONIUM ION],ZN,MG |
| 6XLM |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli RNAP-DNA elongation complex 1 (RDe1) in EcmrR-dependent transcription |
33976201 |
3.20Å |
EM |
RNAP,RNA polymerase sigma factor RpoD |
1N7[CHAPSO],ZN,MG |
| 6XLN |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E. coli RNAP-DNA elongation complex 2 (RDe2) in EcmrR-dependent transcription
|
33976201 |
2.80Å |
EM |
RNAP |
1N7[CHAPSO],ZN,MG |
| 7MKP |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase core enzyme |
34774797 |
3.41Å |
RNAP |
RNAP |
ZN,MG |
| 7MKQ |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli RNA polymerase and RapA binary complex |
34774797 |
4.80Å |
RNAP |
RNAP,RNA polymerase-associated protein RapA |
ZN,MG |
| 6XH8 |
EM |
Prokaryote |
Escherichia coli |
CueR-transcription activation complex with RNA transcript |
34113812 |
4.10Å |
RNAP |
RNAP,HTH-type transcriptional regulator CueR |
ZN,CU |
| 6XH7 |
EM |
Prokaryote |
Escherichia coli |
CueR-TAC without RNA |
34113812 |
3.90Å |
RNAP |
RNAP,HTH-type transcriptional regulator CueR |
ZN,CU |
| 7DY6 |
EM |
Prokaryote |
Escherichia coli |
A refined cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA |
34735884 |
3.68Å |
RNAP |
RNAP,Stringent starvation protein A |
ZN,MG |
| 7M8E |
EM |
Prokaryote |
Escherichia coli |
E.coli RNAP-RapA elongation complex |
34428297 |
3.40Å |
EC |
RNAP,RNA polymerase-associated protein RapA |
ZN,MG |
| 7Q0J |
EM |
Prokaryote |
Escherichia coli |
RNA polymerase elongation complex in more-swiveled conformation |
35318334 |
4.30 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
ZN,MG |
| 7Q0K |
EM |
Prokaryote |
Escherichia coli |
RNA polymerase elongation complex in less-swiveled conformation |
35318334 |
4.00 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
ZN,MG |
| 7N4E |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli sigma 70-dependent paused transcription elongation complex |
35653571 |
3.80 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,RNA polymerase sigma factor RpoD |
ZN,MG |
| 7UBM |
EM |
Prokaryote |
Escherichia coli |
Transcription antitermination complex: "pre-engaged"" Qlambda-loading complex" |
35951650 |
3.13 Å |
TC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,RNA polymerase sigma factor RpoD,Antitermination protein Q |
ZN,MG |
| 7PY3 |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (the consensus NusA-EC) |
35318334 |
3.80 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusA |
ZN,MG |
| 7PYJ |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (NusA elongation complex in less-swiveled conformation) |
35318334 |
4.20 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusA |
ZN,MG |
| 7PYK |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (NusA elongation complex in more-swiveled conformation) |
35318334 |
4.10 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusA |
ZN,MG |
| 8EHI |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of his-elemental paused elongation complex with an unfolded TL (2) |
36795753 |
5.50 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
ZN,MG |
| 7VWY |
EM |
Prokaryote |
Escherichia coli |
Crystal structure of (+)-pulegone reductase from Mentha piperita |
35641097 |
4.57 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,RNA polymerase sigma factor RpoD,Right origin-binding protein |
ZN,MG |
| 7VWZ |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation |
35641097 |
4.00 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,RNA polymerase sigma factor RpoD,Right origin-binding protein |
ZN,MG |
| 7UBN |
EM |
Prokaryote |
Escherichia coli |
Transcription antitermination complex: NusA-containing "engaged"" Qlambda-loading complex" |
35951650 |
3.36 Å |
TC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,RNA polymerase sigma factor RpoD,Transcription termination/antitermination protein NusA,Antitermination protein |
ZN,MG |
| 7PY0 |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusG (NusG-EC in more-swiveled conformation) |
35318334 |
4.50 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG |
ZN,MG |
| 7PY1 |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusG (the consensus NusG-EC) |
35318334 |
3.80 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG |
ZN,MG |
| 7PY8 |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusG (NusG-EC in less-swiveled conformation) |
35318334 |
3.80 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG |
ZN,MG |
| 8E6X |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, lambda-tR1 rut RNA, Mg-ADP-BeF3, and NusG; TEC part |
36697824 |
4.27 Å |
PTC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG |
ZN,MG |
| 8E6Z |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, dC75 rut mimic RNA, Mg-ADP-BeF3, and NusG; TEC part |
36697824 |
4.10 Å |
PTC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG |
ZN,MG |
| 8E3F |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part |
36697824 |
6.50 Å |
PTC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG |
ZN,MG |
| 8E5K |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli Rho-dependent transcription pre-termination complex containing 21 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part |
36697824 |
4.20 Å |
PTC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG |
ZN,MG |
| 8E5O |
EM |
Prokaryote |
Escherichia coli |
Escherichia coli Rho-dependent transcription pre-termination complex containing 24 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part |
36697824 |
4.40 Å |
PTC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG |
ZN,MG |
| 8EG8 |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of consensus elemental paused elongation complex with a folded TL |
36795753 |
3.30 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
1N7[CHAPSO], ZN,MG |
| 8EGB |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of consensus elemental paused elongation complex with an unfolded TL |
36795753 |
3.80 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
1N7[CHAPSO], ZN,MG |
| 8EH9 |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of his-elemental paused elongation complex with a folded TL and a rotated RH-FL (2) |
36795753 |
3.90 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
1N7[CHAPSO], ZN,MG |
| 8EHF |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of his-elemental paused elongation complex with an unfolded TL (1) |
36795753 |
3.30 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
4QM[(3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol],ZN,MG |
| 7PY5 |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA and NusG (the consensus NusA-NusG-EC) |
35318334 |
3.90 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG,Transcription termination/antitermination protein NusA |
ZN,MG |
| 7PY6 |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA and NusG (NusA and NusG elongation complex in less-swiveled conformation) |
35318334 |
4.10 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG,Transcription termination/antitermination protein NusA |
ZN,MG |
| 7PY7 |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA and NusG (NusA and NusG elongation complex in more-swiveled conformation) |
35318334 |
4.10 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,Transcription termination/antitermination protein NusG,Transcription termination/antitermination protein NusA |
ZN,MG |
| 8EG7 |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of pre-consensus elemental paused elongation complex |
36795753 |
3.20 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
1N7[CHAPSO], ZN,MG |
| 8EH8 |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of his-elemental paused elongation complex with a folded TL and a rotated RH-FL (1) |
36795753 |
3.40 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
1N7[CHAPSO], ZN,MG |
| 8EHA |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of his-elemental paused elongation complex with a folded TL and a rotated RH-FL (out) |
36795753 |
3.70 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
1N7[CHAPSO], ZN,MG |
| 8AC2 |
EM |
Prokaryote |
Escherichia coli |
RNA polymerase- post-terminated, open clamp state |
36220101 |
3.70 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
ZN,MG |
| 7W5W |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of SoxS-dependent transcription activation complex with micF promoter DNA |
36243985 |
4.55 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,RNA polymerase sigma factor RpoD,Regulatory protein SoxS |
ZN,MG |
| 7W5X |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of SoxS-dependent transcription activation complex with zwf promoter DNA |
36243985 |
3.40 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,RNA polymerase sigma factor RpoD,Regulatory protein SoxS |
|
| 7W5Y |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of SoxS-dependent transcription activation complex with fpr promoter DNA |
36243985 |
4.20 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega,RNA polymerase sigma factor RpoD,Regulatory protein SoxS |
|
| 8AC0 |
EM |
Prokaryote |
Escherichia coli |
RNA polymerase at U-rich pause bound to regulatory RNA putL - active, closed clamp state |
36220101 |
4.10 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
ZN,MG |
| 8AC1 |
EM |
Prokaryote |
Escherichia coli |
RNA polymerase at U-rich pause bound to non-regulatory RNA - inactive, open clamp state |
36220101 |
4.06 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
ZN,MG |
| 8ACP |
EM |
Prokaryote |
Escherichia coli |
RNA polymerase at U-rich pause bound to regulatory RNA putL - inactive, open clamp state |
36220101 |
4.50 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
ZN,MG |
| 8ABZ |
EM |
Prokaryote |
Escherichia coli |
RNA polymerase at U-rich pause bound to non-regulatory RNA - pause prone, closed clamp state |
36220101 |
3.40 Å |
RNAP |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
ZN,MG |
| 8FVR |
EM |
Prokaryote |
Escherichia coli |
CryoEM structure of E.coli transcription elongation complex |
36997761 |
2.42 Å |
EC |
DNA-directed RNA polymerase subunit alpha,beta,beta',omega |
ZN,MG |
| 7V9U |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli retron-Ec86 (RT-msDNA-RNA) at 3.2 angstrom |
35982312 |
3.12 Å |
RNAP |
RNA-directed DNA polymerase from retron EC86 |
|
| 7XJG |
EM |
Prokaryote |
Escherichia coli |
Cryo-EM structure of E.coli retron-Ec86 in complex with its effector at 2.5 angstrom |
35982312 |
2.51 Å |
RNAP |
RNA-directed DNA polymerase from retron EC86,retron St85 family effector protein |
MG |