| 2RF4 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of the RNA polymerase I subcomplex A14/43 |
18160037 |
3.10 Å |
RNAP |
RPA4 |
|
| 4C2M |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Structure of RNA polymerase I at 2.8 angstrom resolution |
24153182 |
2.80 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN SO4 |
| 4C3H |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Structure of 14-subunit RNA polymerase I at 3.27 angstrom resolution, crystal form c2-93 |
24153184 |
3.27 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 4C3I |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Structure of 14-subunit RNA polymerase I at 3.0 angstrom resolution, crystal form c2-100 |
24153184 |
3.00 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
MPD[ (4S)-2-METHYL-2,4-PENTANEDIOL ], SO4, ZN ,MG |
| 4C3J |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Structure of 14-subunit RNA polymerase I at 3.35 angstrom resolution, crystal form c2-90 |
24153184 |
3.35 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 4YM7 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I structure with an alternative dimer hinge |
26327374 |
5.50 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 5G5L |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I-Rrn3 complex at 4.8 a resolution |
27418309 |
4.80 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3 |
ZN |
| 5LMX |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Monomeric RNA polymerase I at 4.9 angstrom resolution |
28262097 |
4.90 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 5M3F |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase I elongation complex at 3.8 angstrom |
27842382 |
3.80 Å |
EC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
SO4 ZN MG |
| 5M3M |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Free monomeric RNA polymerase I at 4.0 angstrom resolution |
27842382 |
4.00 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
SO4 ZN |
| 5M5W |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I open complex |
27867008 |
3.80 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 5M5X |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I elongation complex 1 |
27867008 |
4.00 Å |
EC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 5M5Y |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I elongation complex 2 |
27867008 |
4.00 Å |
EC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 5M64 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I elongation complex with A49 tandem winged helix domain |
27867008 |
4.60 Å |
EC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 5N5Y |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
cryo-EM structure of RNA polymerase I in complex with Rrn3 and core factor (orientation III) |
28340337 |
7.70 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
SO4 ZN MG |
| 5N5Z |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
cryo-EM structure of RNA polymerase I in complex with Rrn3 and core factor (orientation II) |
28340337 |
7.70 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
ZN |
| 5N60 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
cryo-EM structure of RNA polymerase I in complex with Rrn3 and core factor (orientation I) |
28340337 |
7.70 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
ZN |
| 5N61 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I initially transcribing complex |
28340337 |
3.40 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
SO4 ZN MG |
| 5OA1 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I pre-initiation complex |
28739580 |
4.40 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
ZN |
| 5W5Y |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I initial transcribing complex |
28623663 |
3.80 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF RRN6/RRN7/RRN11 |
ZN |
| 5W64 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I initial transcribing complex state 1 |
28623663 |
4.20 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF RRN6/RRN7/RRN11 |
ZN |
| 5W65 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I initial transcribing complex state 2 |
28623663 |
4.30 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF RRN6/RRN7/RRN11 |
ZN |
| 5W66 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I initial transcribing complex state 3 |
28623663 |
3.90 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF RRN6/RRN7/RRN11 |
ZN |
| 6H67 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) |
30127008 |
3.60 Å |
EC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN MG |
| 6H68 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49 |
30127008 |
4.60 Å |
EC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 6HKO |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP |
30913026 |
3.42 Å |
EC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,GMPCPP |
G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ],ZN, MG |
| 6HLQ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPP |
30913026 |
3.18 Å |
EC |
RPA190/RPA135/RPA14/RPA43/RPA12,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ],ZN, MG |
| 6HLR |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused) |
30913026 |
3.18 Å |
EC |
RPA190/RPA135/RPA14/RPA43/RPA12,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ],ZN, MG |
| 6HLS |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Yeast apo RNA polymerase I* |
30913026 |
3.21 Å |
RNAP |
RPA190/RPA135/RPA14/RPA43/RPA12,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5 |
ZN |
| 6RQH |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I closed conformation 1 (CC1) |
31804486 |
3.70 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
|
| 6RQL |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I closed conformation 2 (CC2) |
31804486 |
2.90 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
|
| 6RQT |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I-tWH-Rrn3-DNA |
To be published. |
4.00 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3 |
ZN |
| 6RRD |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I pre-initiation complex DNA opening intermediate 1 |
31804486 |
3.10 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
ZN |
| 6RUI |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I pre-initiation complex DNA opening intermediate 2 |
31804486 |
2.70 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
ZN |
| 6RUO |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I open complex conformation 1 |
31804486 |
3.50 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
ZN |
| 6RWE |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase I open complex conformation 2 |
31804486 |
3.00 Å |
IC |
RPA190/RPA135/RPA14/RPA43/RPA12/RPA49/RPA34,RPAC1/RPAC2,RPABC1/RPABC2/RPABC3/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
ZN |
| 5O7X |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Rystal structure of S. Cerevisiae core factor at 3.2 angstrom resolution |
28340337 |
3.20 Å |
|
TIF RRN6,RRN7,RRN11 |
SO4 MG |
| 3NFI |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of tandem winged helix domain of RNA polymerase I subunit A49 |
20797630 |
1.90 Å |
Subunit |
RPA49 |
PE4[ 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL ] |
| 3NFH |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of tandem winged helix domain of RNA polymerase I subunit A49 (p4) |
20797630 |
2.17 Å |
Subunit |
RPA49 |
|
| 6TPS |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Early intermediate RNA polymerase I pre-initiation complex - eipic |
32139698 |
3.54 Å |
IC |
RPA12/RPA14/RPA34/RPA43/RPA49/RPA135/RPA190,RPAC1/RPAC2,RPABC1/RPABC2/RPABC4/RPABC5,TIF Rrn3/RRN6/RRN7/RRN11 |
ZN MG |
| 5FJ9 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
cryo-EM structure of yeast apo RNA polymerase III at 4.6 angstrom |
26605533 |
4.60 Å |
RNAP |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 |
ZN |
| 5FJ8 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
cryo-EM structure of yeast RNA polymerase III elongation complex at 3. 9 angstrom |
26605533 |
3.90 Å |
EC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 |
ZN |
| 5FJA |
EM |
Eukaryote |
Saccharomyces cerevisiae |
cryo-EM structure of yeast RNA polymerase III at 4.7 angstrom |
26605533 |
4.65 Å |
RNAP |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 |
ZN |
| 6CNB |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase III initial transcribing complex |
30083386 |
4.10 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP |
ZN |
| 6CNC |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase III open complex |
30083386 |
4.10 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP |
ZN |
| 6CND |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase III natural open complex (nOC) |
30083386 |
4.80 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP |
ZN |
| 6CNF |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase III elongation complex |
30083386 |
4.50 Å |
EC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP |
ZN |
| 6EU0 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase III open pre-initiation complex (OC-PIC) |
29345637 |
4.00 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP |
ZN MG |
| 6EU1 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase III - open DNA complex (OC-POL3) |
29345637 |
3.40 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 |
ZN MG |
| 6EU2 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Apo RNA polymerase III - open conformation (oPOL3) |
29345637 |
3.40 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 |
ZN MG |
| 6EU3 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Apo RNA polymerase III - closed conformation (cPOL3) |
29345637 |
3.30 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5 |
ZN MG |
| 6F40 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase III open complex |
29345638 |
3.70 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP |
ZN |
| 6F41 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase III initially transcribing complex |
29345638 |
4.30 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP |
ZN |
| 6F42 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase III closed complex CC1. |
29345638 |
5.50 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP |
ZN |
| 6F44 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase III closed complex CC2. |
29345638 |
4.20 Å |
IC |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,TFIIIB,TBP |
|
| 6TUT |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Cryo-EM structure of the RNA polymerase III-MAF1 complex |
32066962 |
3.25 Å |
RNAP |
RPC1/RPC2/RPC3/RPC4/RPC5/RPC6/RPC7/RPC8/RPC9/RPC10,RPAC1/RPAC2,RPABC 1/RPABC 2/RPABC 3/RPABC 4/RPABC 5,MAF1 |
ZN |
| 1NT9 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete 12-subunit RNA polymerase II |
12746495 |
4.20Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
|
| 1PQV |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II-TFIIS complex |
12914699 |
3.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIS |
ZN MG |
| 1WCM |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete 12-subunit RNA polymerase II at 3.8 angstrom |
15591044 |
3.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 1Y14 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of yeast subcomplex of RPB4 and RPB7 |
15591044 |
2.30 Å |
RNAP |
RPB4,RPB7 |
|
| 1Y1V |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Refined RNA polymerase II-TFIIS complex |
15610738 |
3.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIS |
ZN MG |
| 1Y1W |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete RNA polymerase II elongation complex |
15610738 |
4.00Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 1Y1Y |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II-TFIIS-DNA/RNA complex |
15610738 |
4.00Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
|
| 1Y77 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete RNA polymerase II elongation complex with substrate analogue GMPCPP |
15610738 |
4.50Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG |
| 2B63 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete RNA polymerase II-RNA inhibitor complex |
16341226 |
3.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 2B8K |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
12-subunit RNA polymerase II |
16765890 |
4.15Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN |
| 2JA5 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
CPD lesion containing RNA polymerase II elongation complex A |
17290000 |
3.80Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 2JA6 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
CPD lesion containing RNA polymerase II elongation complex B |
17290000 |
4.00Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 2JA7 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
CPD lesion containing RNA polymerase II elongation complex C |
17290000 |
3.80Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 2JA8 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
CPD lesion containing RNA polymerase II elongation complex D |
17290000 |
3.80Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 2R7Z |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Cisplatin lesion containing RNA polymerase II elongation complex |
17994106 |
3.80Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
CPT[ Cisplatin ] ZN MG |
| 2R92 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Elongation complex of RNA polymerase II with artificial RDRP scaffold |
18004386 |
3.80Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 2R93 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop |
18004386 |
4.00Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 2VUM |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Alpha-amanitin inhibited complete RNA polymerase II elongation complex |
18552824 |
3.40Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3FKI |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
12-subunit RNA polymerase II refined with Zn-SAD data |
19289466 |
3.88Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3H3V |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNAP II containing poly(A)-signal sequence in the active site |
19535338 |
4.00Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3HOU |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete RNA polymerase II elongation complex I with a T-U mismatch |
19560423 |
3.20Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN |
| 3HOV |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete RNA polymerase II elongation complex II |
19560423 |
3.50Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3HOW |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3-uridine |
19560423 |
3.60Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3HOX |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete RNA polymerase II elongation complex VI |
19560423 |
3.65Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3HOY |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete RNA polymerase II elongation complex VI |
19560423 |
3.40Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3HOZ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3-guanine |
19560423 |
3.65Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3I4M |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
8-oxoguanine containing RNA polymerase II elongation complex D |
19758983 |
3.70Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3I4N |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
8-oxoguanine containing RNA polymerase II elongation complex E |
19758983 |
3.90Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3J0K |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Orientation of RNA polymerase II within the human VP16-mediator-pol II-TFIIF assembly |
21468301 |
36.0Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3J1N |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Cryo-EM map of a yeast minimal preinitiation complex interacting with the mediator head module |
22579255 |
16.0Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
|
| 3K1F |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of RNA polymerase II in complex with TFIIB |
19820686 |
4.30Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB |
ZN |
| 3PO2 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Arrested RNA polymerase II elongation complex |
21346759 |
3.30Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
EPE[ 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID?? PEG??DI(HYDROXYETHYL)ETHER] ZN MG ACT[ ACETATE ION ] |
| 3PO3 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Arrested RNA polymerase II reactivation intermediate |
21346759 |
3.30Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB |
EPE[ 4-(2-HYDROXYETHYL)-2-PIPERAZINE ETHANESULFONIC ACID?? PEG??DI(HYDROXYETHYL)ETHER ] ZN MG ACT[ ACETATE ION ] |
| 3QT1 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II variant containing a chimeric RPB9-C11 subunit |
21454497 |
4.30Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4A3B |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid |
22056778 |
3.50Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4A3C |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid |
22056778 |
3.50Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4A3D |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid |
22056778 |
3.40Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4A3E |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP |
22056778 |
3.40Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
APC[ IPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG |
| 4A3F |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP |
22056778 |
3.50Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
APC[ IPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG |
| 4A3G |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid |
22056778 |
3.50Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4A3I |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II binary complex with DNA |
22056778 |
3.80Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4A3J |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP |
22056778 |
3.70Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG |
| 4A3K |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid |
22056778 |
3.50Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4A3L |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP |
22056778 |
3.50Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG |
| 4A3M |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP |
22056778 |
3.90Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG |
| 4A93 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex containing a CPD lesion |
22405652 |
3.40Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4BBR |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Structure of RNA polymerase II-TFIIB complex |
23151482 |
3.40Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB |
ZN MG |
| 4BBS |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Structure of an initially transcribing RNA polymerase II-TFIIB complex |
23151482 |
3.60Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB |
ZN MG |
| 4BXX |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Arrested RNA polymerase II-Bye1 complex |
24003114 |
3.28Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 |
ZN MG |
| 4BXZ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II-Bye1 complex |
24003114 |
4.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 |
ZN MG |
| 4BY1 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Elongating RNA polymerase II-Bye1 TLD complex soaked with AMPCPP |
24003114 |
3.60Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 |
APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG |
| 4BY7 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Elongating RNA polymerase II-Bye1 TLD complex |
24003114 |
3.15Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 |
EPE[ 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID ] ZN MG |
| 4V1N |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Architecture of the RNA polymerase II-mediator core transcription initiation complex |
25652824 |
7.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TBP,TFIIF subunit alpha,TFIIF subunit beta |
ZN MG |
| 4V1O |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Architecture of the RNA polymerase II-mediator core transcription initiation complex |
25652824 |
9.70Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TBP,TFIIF subunit alpha,TFIIF subunit beta,Mediator of RNA polymerase II transcription subunit 6/8/11/18/20/22 |
ZN MG |
| 5C3E |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble |
26186291 |
3.70Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 5C44 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble |
26186291 |
3.95Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
|
| 5C4A |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble |
26186291 |
4.20Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 5C4X |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble |
26186291 |
4.00Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 5FMF |
EM |
Eukaryote |
Saccharomyces cerevisiae |
The P-lobe of RNA polymerase II pre-initiation complex |
26483468 |
6.00Å |
pIC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,DNA repair helicase RAD25 and SSL2,Transcription elongation factor S-II and DST1,RNA polymerase II pre-Initiation complex(TOA1),TFIIA subunit 2(TOA2), TFIIB(SUA7),TBP,TFIIE subunit alpha(TFA1),TFIIE subunit beta(TFA2),RNA polymerase II pre-Initiation complex (Tfg1),TFIIF subunit beta(TFG2),TFIIB subint 2(TFB2)/5(TFB5),DNA repair helicase RAD3 |
ZN MG |
| 5FYW |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Transcription initiation complex structures elucidate DNA opening (OC) |
27193681 |
4.35Å |
OC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TBP,TFIIF subunit alpha,TFIIF subunit bata,TFIIA large subunit,TFIIA subunit 2,TFIIE subunit alpha,TFIIE subunit beta |
ZN MG |
| 5FZ5 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Transcription initiation complex structures elucidate DNA opening (CC) |
27193681 |
8.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit bata,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta |
ZN MG |
| 5IP7 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Structure of RNA polymerase II-Tfg1 peptide complex |
27193681 |
3.52Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 5IP9 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Structure of RNA polymerase II-TFIIF complex |
27193681 |
3.90Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 5OQJ |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Structure of yeast transcription pre-initiation complex with TFIIH |
29088706 |
4.70Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,DNA repair helicase RAD3,RNA polymerase II transcription factor B subunit 1,RNA polymerase II transcription factor B subunit 2,RNA polymerase II transcription factor B subunit 3,RNA polymerase II transcription factor B subunit 4,RNA polymerase II transcription factor B subunit 5,Suppressor of stem-loop protein 1,DNA repair helicase RAD25 |
SF4[ IRON/SULFUR CLUSTER ] ZN MG |
| 5OQM |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Structure of yeast transcription pre-initiation complex with TFIIH and core mediator |
29088706 |
5.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,subunit TFB2,subunit 3,subunit TFB4,subunit TFB5,subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Mediator of RNA polymerase II transcription subunit 6,subunit 8,subunit 11,subunit 17, subunit 18,subunit 20,subunit 22,subunit 4, subunit 7, subunit 9, subunit 10, subunit 14, subunit 19,subunit 21,subunit 31 |
SF4[ IRON/SULFUR CLUSTER ]ZN MG |
| 5OT2 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex in the presence of 3D-Napht-A |
29087308 |
3.20Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
AHW[ 2-ethyl-7-methoxy-naphthalene ]ZN MG |
| 5SVA |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Mediator-RNA polymerase II pre-initiation complex |
27610567 |
15.3Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Mediator of RNA polymerase II transcription subunit 6,subunit 8,subunit 11,ubunit 17,subunit 18,subunit 20,subunit 22,subunit 4,subunit 7,subunit 9,subunit 21,subunit 31,DNA repair helicase RAD3,DNA repair helicase RAD25,RNA polymerase II transcription factor B subunit 2,RNA polymerase II transcription factor B subunit 5,Transcription initiation factor IIB,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,TBP,RPB1,Transcription initiation factor TFIID subunit 14 |
ZN MG |
| 5U5Q |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
12 subunit RNA polymerase II at room temperature collected using SFX |
28300169 |
3.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 5VVR |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Ternary complex of RNA pol II, transcription scaffold and Rad26 |
29168508 |
5.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,DNA repair and recombination protein Rad26 |
ZN MG |
| 5VVS |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA pol II elongation complex |
29168508 |
6.40Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 6GYK |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Structure of a yeast closed complex (core CC1) |
30472190 |
5.10Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2 |
ZN MG |
| 6GYL |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Structure of a yeast closed complex with distorted DNA (core CCdist) |
30472190 |
4.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Tfa1,Transcription initiation factor IIE subunit beta |
ZN MG |
| 6GYM |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Structure of a yeast closed complex with distorted DNA (CCdist) |
30472190 |
6.70Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,General transcription and DNA repair factor IIH helicase subunit XPD,DNA repair helicase RAD3,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,RNA polymerase II transcription factor B subunit 4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,DNA repair helicase RAD25,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha |
SF4[ IRON/SULFUR CLUSTER ] ZN MG |
| 6I84 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Structure of transcribing RNA polymerase II-nucleosome complex |
30575770 |
4.40Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.2,Histone H2A type 1,Histone H4,Histone H2B 1.1 |
ZN MG |
| 1I3Q |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II crystal form I at 3.1 angstrom resolution |
11313498 |
3.10 Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide |
ZN MG |
| 1I50 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II crystal form II |
11313498 |
2.80 Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide |
ZN MN |
| 1I6H |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II enlongation complex |
11313499 |
3.30Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide |
ZN MG |
| 1K83 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of yeast RNA polymerase II complexed with the inhibitor alpha amanitin |
11805306 |
2.80 Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide |
ZN MG |
| 1NIK |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Wild type RNA polymerase II |
12746498 |
4.10Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN |
| 1R5U |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II TFIIB complex |
14963322 |
4.50Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide,TFIIB |
ZN MG |
| 1R9S |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II strand separated elongation complex, matched nucleotide |
15537538 |
4.25Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide |
UTP ZN MG |
| 1R9T |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II strand separated elongation complex, mismatched nucleotide |
15537538 |
3.50Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide |
ATP ZN MG |
| 1SFO |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II strand separated elongation complex |
14963331 |
3.61Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide |
ZN MG |
| 1TWA |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II complexed with ATP |
15537538 |
3.20Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide |
ATP ZN MN |
| 1TWC |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II complexed with GTP |
15537538 |
3.00Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide |
GTP ZN MN |
| 1TWF |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II complexed with UTP at 2.3 angstrom resolution |
15537538 |
2.30Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide |
UTP ZN MN |
| 1TWG |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II complexed with CTP |
15537538 |
3.30Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide |
CTP ZN MN |
| 1TWH |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II complexed with dATP |
15537538 |
3.40Å |
RNAP |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide |
ATP ZN MN |
| 2E2H |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex at 5 mm MG2+ with GTP |
17129781 |
3.95Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide |
GTP ZN MG |
| 2E2I |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex in 5 mm mg+2 with dGTP |
17129781 |
3.41Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide |
DGT[ 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE ] ZN MG |
| 2E2J |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex in 5 mm mg+2 with GMPCPP |
17129781 |
3.50Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide |
G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG |
| 2L0I |
SOLUTIONNMR |
Eukaryote |
Saccharomyces cerevisiae |
Solution structure of Rtt103 CTD-interacting domain bound to a Ser2 phosphorylated CTD peptide |
20818393 |
|
RNAP |
Regulator of Ty1 transposition protein 103,DNA-directed RNA polymerase CTD |
|
| 2LO6 |
SOLUTIONNMR |
Eukaryote |
Saccharomyces cerevisiae |
Structure of Nrd1 CID bound to phosphorylated RNAP II CTD |
22892239 |
|
CTD |
Protein NRD1,RPB1 |
|
| 2NVQ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex in 150 mm mg+2 with dUTP |
17129781 |
2.90Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide |
DUT[ DEOXYURIDINE-5'-TRIPHOSPHATE ] ZN MG |
| 2NVT |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex in 150 mm mg+2 with GMPCPP |
17129781 |
3.36Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide |
G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG |
| 2NVX |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex in 5 mm mg+2 with dUTP |
17129781 |
3.60Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide |
DUT[ DEOXYURIDINE-5'-TRIPHOSPHATE ] ZN MG |
| 2NVY |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II form II in 150 mm MN+2 |
17129781 |
3.40Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide |
ZN MN |
| 2NVZ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with UTP, updated 11/2006 |
17129781 |
4.30Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide |
UTP ZN MG |
| 2YU9 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex in 150 mm mg+2 with UTP |
17129781 |
3.40Å |
EC |
RNA polymerase II largest subunit,RNA polymerase II 140 kDa polypeptide,RNA polymerase II 45 kDa polypeptide,RNA polymerases I, II, and III 27 kDa polypeptide,RNA polymerases I, II, and III 23 kDa polypeptide,RNA polymerases I, II, and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide |
UTP ZN MG |
| 3CQZ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin |
18538653 |
2.80Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,ALPHA-AMANITin |
ZN |
| 3GTG |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Backtracked RNA polymerase II complex with 12mer RNA |
19478184 |
3.78Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3GTJ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Backtracked RNA polymerase II complex with 13mer RNA |
19478184 |
3.42Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3GTK |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Backtracked RNA polymerase II complex with 18mer RNA |
19478184 |
3.80Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN |
| 3GTL |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Backtracked RNA polymerase II complex with 13mer with g<>u mismatch |
19478184 |
3.38Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3GTM |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Co-complex of backtracked RNA polymerase II with TFIIS |
19478184 |
3.80Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription elongation factor S-II |
ZN MG |
| 3GTP |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Backtracked RNA polymerase II complex with 24mer RNA |
19478184 |
3.90Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3GTQ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Backtracked RNA polymerase II complex induced by damage |
19478184 |
3.80Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN |
| 3K7A |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of an RNA polymerase II-TFIIB complex |
19965383 |
3.80Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB |
ZN |
| 3M3Y |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex C |
20448203 |
3.18Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
C7P[ cis-diammine(pyridine)chloroplatinum(II) ] ZN MG |
| 3RZD |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 5-nt RNA |
21798951 |
3.30Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3RZO |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 4-nt RNA |
21798951 |
3.00Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN |
| 3S14 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 6-nt RNA |
21798951 |
2.85Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3S15 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 7-nt RNA |
21798951 |
3.30Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3S16 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with an 8-nt RNA |
21798951 |
3.24Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3M4O |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex B |
20448203 |
3.57Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
C7P[ cis-diammine(pyridine)chloroplatinum(II) ] ZN MG |
| 3S17 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 9-nt RNA |
21798951 |
3.20Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3S1M |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 5-nt RNA (variant 1) |
21798951 |
3.13Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3S1N |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 5-nt RNA (variant 2) |
21798951 |
3.10Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3S1Q |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 5-nt 3-deoxy RNA soaked with ATP |
21798951 |
3.30Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ATP ZN MG |
| 3S1R |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 5-nt 3-deoxy RNA soaked with GTP |
21798951 |
3.20Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
GTP ZN MG |
| 3S2D |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 5-nt RNA containing a 5Br-U |
21798951 |
3.20Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 3S2H |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initiation complex with a 6-nt RNA containing a 2[prime]-iodo ATP |
21798951 |
3.30Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4GWQ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Structure of the mediator head module from S. Cerevisiae in complex with the carboxy-terminal domain (CTD) of RNA polymerase II RPB1 subunit |
23071300 |
4.50Å |
RNAP |
Mediator of RNA polymerase II transcription subunit 11,Mediator of RNA polymerase II transcription subunit 17,Mediator of RNA polymerase II transcription subunit 8,Mediator of RNA polymerase II transcription subunit 22,Mediator of RNA polymerase II transcription subuni p18,Mediator of RNA polymerase II transcription subunit 20,Mediator of RNA polymerase II transcription subunit 6,RPB1 |
|
| 4V1M |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Architecture of the RNA polymerase II-mediator core transcription initiation complex |
25652824 |
6.60Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4X67 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of elongating yeast RNA polymerase II stalled at oxidative cyclopurine DNA lesions. |
25605892 |
4.10Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN |
| 4X6A |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of yeast RNA polymerase II encountering oxidative cyclopurine DNA lesions |
25605892 |
3.96Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN |
| 4Y52 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of 5-carboxycytosine recognition by RNA polymerase II during transcription elongation. |
26123024 |
3.50Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 4Y7N |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
The structure insight into 5-carboxycytosine recognition by RNA polymerase II during transcription elongation. |
26123024 |
3.30Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG |
| 5C4J |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble |
26186291 |
4.00Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 5LVF |
SOLUTIONNMR |
Eukaryote |
Saccharomyces cerevisiae |
Solution structure of Rtt103 CTD-interacting domain bound to a Thr4 phosphorylated CTD peptide |
28468956 |
|
CTD |
Regulator of Ty1 transposition protein 103 |
|
| 5M9D |
SOLUTIONNMR |
Eukaryote |
Saccharomyces cerevisiae |
Solution structure of Rtt103 CTD-interacting domain bound to a Ser2ser7 phosphorylated CTD peptide |
29073019 |
|
CTD |
Regulator of Ty1 transposition protein 103 |
|
| 5VKL |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
SPT6 tSH2-RPB1 1476-1500 Ps1493 |
28826505 |
2.20Å |
TF |
Transcription elongation factor SPT6,RPB1 |
|
| 5VKO |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
SPT6 tSH2-RPB1 1468-1500 pT1471, Ps1493 |
28826505 |
1.80Å |
TF |
Transcription elongation factor SPT6,RPB1 |
IPO[ ISOPROPYL ALCOHOL ] |
| 5W4U |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Pol II elongation complex with an N6-methyladenine-containing template |
28933854 |
3.60Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 5W51 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Pol II elongation complex with an n6-methyladenine-containing template and a matched UMPNPP |
28933854 |
3.40Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
2KH[ 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine ] ZN MG |
| 6BLO |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Pol II elongation complex with an abasic lesion at I+1 position |
29487211 |
3.40Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 6BLP |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Pol II elongation complex with an abasic lesion at I+1 position, soaking AMPCPP |
29487211 |
3.20Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
APC[[DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG |
| 6BM2 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Pol II elongation complex with an abasic lesion at I-1 position |
29487211 |
3.40Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 6BM4 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Pol II elongation complex with an abasic lesion at I-1 position,soaking UMPNPP |
29487211 |
2.95Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
2KH[ 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine ] ZN MG |
| 6BQF |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Pol II elongation complex with dt-apat I+1, I-1 position |
29487211 |
3.35Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 6NPW |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Ssu72/Sympk in complex with Ser2/Ser5 phosphorylated peptide |
30971428 |
2.49Å |
RNAP |
Symplekin,Ssu72 ortholog(LD40846p),Ser2/Ser5 phosphorylated peptide |
PO4 |
| 6O6C |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex arrested at a CPD lesion |
31200019 |
3.10Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 6UPX |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 |
32284409 |
3.40Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 6UPY |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2e |
32284409 |
3.40Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG |
| 6UPZ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3 |
32284409 |
3.10Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
PPV[ PYROPHOSPHATE ] ZN MG |
| 6UQ0 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4 |
32284409 |
3.56Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 6UQ2 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with Dg in state 1 |
32284409 |
3.20Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 6UQ1 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 6 |
32284409 |
3.60Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 6UQ3 |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 5 |
32284409 |
3.47Å |
EC |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
PPV[ PYROPHOSPHATE ] ZN MG |
| 3GTO |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
Backtracked RNA polymerase II complex with 15mer RNA |
19478184 |
4.00 Å |
RNAP |
RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 |
ZN MG |
| 2CKZ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
X-ray structure of RNA polymerase III subcomplex C17-C25. |
16818233 |
3.20Å |
RNAP |
RNAPIII 18KD polypeptide,RNAPIII 25KD polypeptide |
|
| 1DZF |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RPB5 from S.cerevisiae
|
10841537 |
1.90Å |
RNAP |
RPABC1 |
|
| 7KED |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with unnatural base dTPT3 |
34140682 |
3.60Å |
EM |
RNAP |
ZN,MG |
| 7KEE |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site |
34140682 |
3.45Å |
EM |
RNAP |
WCG [insert into `user` values (1S)-1,4-anhydro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-1-(3-methoxynaphthalen-2-yl)-D-ribitol],ZN,MG |
| 7KEF |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state |
34140682 |
3.89Å |
EM |
RNAP |
WCG [insert into `user` values (1S)-1,4-anhydro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-1-(3-methoxynaphthalen-2-yl)-D-ribitol],ZN,MG |
| 7RIQ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex scaffold 1 without polyamide |
35022237 |
3.00Å |
EM |
RNAP |
ZN,MG |
| 7RIM |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 |
35022237 |
2.90Å |
EM |
RNAP |
5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca |
| 7RIQ |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP
|
35022237 |
3.30Å |
EM |
RNAP |
5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca |
| 7RIW |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex scaffold 2, without polyamide
|
35022237 |
3.20Å |
EM |
RNAP |
ZN,MG |
| 7RIX |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2
|
35022237 |
3.40Å |
EM |
RNAP |
5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca |
| 7RIP |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP
|
35022237 |
3.30Å |
EM |
RNAP |
5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca |
| 7RIY |
XRD |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2 soaked with UTP
|
35022237 |
3.70Å |
EM |
RNAP |
5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca |
| 7ML4 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initially transcribing complex (ITC) |
35051353 |
3.10Å |
IC |
RNAP,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIB,BJ4_G0050160.mRNA.1.CDS.1,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH,Tfb1,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH subunit TFB5,RNA polymerase II transcription factor B subunit 2,Transcription initiation factor IIE subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,TATA-box-binding protein,Transcription initiation factor IIE subunit alpha |
SF4,MG,ZN |
| 7MEI |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Composite structure of EC+EC |
35051353 |
3.54Å |
EC |
RNAP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta |
MG,ZN |
| 7MK9 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Complex structure of trailing EC of EC+EC (trailing EC-focused) |
35051353 |
3.54Å |
EC |
RNAP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta |
MG,ZN |
| 7MKA |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Complex structure of trailing EC of EC+EC (trailing EC-focused) |
35051353 |
3.54Å |
EC |
RNAP |
MG,ZN |
| 7ML1 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II pre-initiation complex (PIC2) |
35051353 |
4.00Å |
PIC |
RNAP,Tfb1,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit SSL1,RNA polymerase II transcription factor B subunit 2,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH helicase subunit XPB,BJ4_G0050160.mRNA.1.CDS.1,TATA-box-binding protein,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta |
SF4,MG,ZN |
| 7ML2 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II pre-initiation complex (PIC3) |
35051353 |
3.40Å |
PIC |
RNAP,Tfb1,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,BJ4_G0004860.mRNA.1.CDS.1,Tfb1,Tfb4,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH,RNA polymerase II transcription factor B subunit 2,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH helicase subunit XPB,BJ4_G0050160.mRNA.1.CDS.1 |
SF4,MG,ZN |
| 7ML4 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II initially transcribing complex (ITC) |
35051353 |
3.10Å |
PIC |
RNAP,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIB,BJ4_G0050160.mRNA.1.CDS.1,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH,Tfb1,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH subunit TFB5,RNA polymerase II transcription factor B subunit 2,Transcription initiation factor IIE subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,TATA-box-binding protein,Transcription initiation factor IIE subunit alpha |
SF4,MG,ZN |
| 7O4I |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble |
34133942 |
3.20Å |
PIC |
RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta |
ADP,SF4,BEF,MG,ZN |
| 7O4J |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex (consensus) |
34133942 |
2.90Å |
PIC |
RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta |
ADP,SF4,BEF,MG,ZN |
| 7O4K |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast TFIIH in the contracted state within the pre-initiation complex |
34133942 |
3.60Å |
PIC |
RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta |
ADP,SF4,BEF,MG,ZN |
| 7O4L |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast TFIIH in the expanded state within the pre-initiation complex |
34133942 |
3.40Å |
PIC |
RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta |
ADP,SF4,BEF,MG,ZN |
| 7O72 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA |
34133942 |
3.40Å |
PIC |
RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta |
ADP,SF4,BEF,MG,ZN |
| 7O73 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA |
34133942 |
3.40Å |
PIC |
RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB2,subunit TFB1,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta |
ADP,SF4,BEF,MG,ZN |
| 7O75 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA |
34133942 |
3.20Å |
PIC |
RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB2,subunit TFB1,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta |
ADP,SF4,BEF,MG,ZN |
| 7ML0 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
RNA polymerase II pre-initiation complex (PIC1) |
35051353 |
3.00Å |
PIC |
RNAP,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,TATA-box-binding protein,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit SSL1,RNA polymerase II transcription factor B subunit 2,General transcription and DNA repair factor IIH subunit TFB5,BJ4_G0050160.mRNA.1.CDS.1,General transcription and DNA repair factor IIH helicase subunit XPB |
SF4,MG,ZN |
| 7UIG |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Mediator-PIC Early (Mediator A) |
36731470 |
4.30 Å |
PIC |
Mediator of RNA polymerase II transcription subunit 1,subunit 4,subunit 6,subunit 7,subunit 8,subunit 9,subunit 10,subunit 11,subunit 14, subunit 17,subunit 18,subunit 19,subunit 20,subunit 21,subunit 22,subunit 31,DNA-directed RNA polymerase II subunit RPB1 |
|
| 7MKA |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Structure of EC+EC (leading EC-focused) |
|
3.54 Å |
EC |
DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC5,RPABC4 |
ZN,MG |
| 7MEI |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Composite structure of EC+EC |
35051353 |
3.54 Å |
EC |
DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,DNA-directed RNA polymerase II subunit RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta |
ZN,MG |
| 7MK9 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Complex structure of trailing EC of EC+EC (trailing EC-focused) |
|
3.54 Å |
EC |
DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta |
ZN,MG |
| 8CEN |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator |
37014863 |
3.00 Å |
PIC |
General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,Mediator of RNA polymerase II transcription subunit 6,Mediator of RNA polymerase II transcription subunit 8,Mediator of RNA polymerase II transcription subunit 11,Mediator of RNA polymerase II transcription subunit 17,Mediator of RNA polymerase II transcription subunit 18,Mediator of RNA polymerase II transcription subunit 20,Mediator of RNA polymerase II transcription subunit 22,Mediator of RNA polymerase II transcription subunit 4,Mediator of RNA polymerase II transcription subunit 7,Mediator of RNA polymerase II transcription subunit 9,Mediator of RNA polymerase II transcrip |
SF4[IRON/SULFUR CLUSTER],ZN,MG |
| 8CEO |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome |
37014863 |
3.60 Å |
PIC |
General transcription and DNA repair factor IIH helicase subunit XPD,TFB1 isoform 1,RNA polymerase II transcription factor B subunit 2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH,General transcription and DNA repair factor IIH helicase subunit XPB,RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC5,RPABC4,Transcription initiation factor IIB,TATA-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,TOA1 isoform 1,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,Mediator of RNA polymerase II transcription subunit 1,4,6,7,8,9,10,11,14,17,18,19,20,21,22,31,Histone H3.2,Histone H4,Histone H2A,Histone H2B |
SF4[IRON/SULFUR CLUSTER],ZN,MG |
| 7UIL |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Mediator-PIC Early (Tail A/B Dimer) |
36731470 |
4.30 Å |
PIC |
Mediator of RNA polymerase II transcription subunit 1,2,3,5,14,15,16 |
|
| 7ZS9 |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A) |
36411341 |
3.10 Å |
PIC |
RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 |
SF4[IRON/SULFUR CLUSTER],ZN,MG |
| 7ZSA |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B) |
36411341 |
4.00 Å |
PIC |
RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 |
SF4[IRON/SULFUR CLUSTER],ZN,MG |
| 7ZSB |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, complex C |
36411341 |
6.60 Å |
PIC |
RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 |
SF4[IRON/SULFUR CLUSTER],ZN,MG |
| 7Z0O |
EM |
Eukaryote |
Saccharomyces cerevisiae |
Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA |
35442737 |
2.80 Å |
RNAP |
Histone H3,Histone H4,RNA polymerase I-specific transcription initiation factor RRN5,RNA polymerase I-specific transcription initiation factor RRN9,RNA polymerase I-specific transcription initiation factor RRN10,Upstream activation factor subunit UAF30,TATA-box-binding protein |
|