RNAP3D

PDB Method Taxonomy Type Organism Name Reference_pub Resolution Stage  Contents   Ligands 
5FLM EM Eukaryote RNAP II Bos taurus Structure of transcribing mammalian RNA polymerase II 26789250 3.40 Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5OIK EM Eukaryote RNAP II Bos taurus Structure of an RNA polymerase II-DSIF transcription elongation complex 28892040 3.70Å EC RNA polymerase II,Spt4,Spt5 ZN MG
2GHQ XRD Eukaryote RNAP II Homo sapiens CTD-specific phosphatase SCP1 in complex with peptide C-terminal domain of RNA polymerase II 17157258 2.05 Å RNAP RNAP II largest subunit,Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 MG
2GHT XRD Eukaryote RNAP II Homo sapiens CTD-specific phosphatase SCP1 in complex with peptide from C-terminal domain of RNA polymerase II 17157258 1.80 Å RNAP RNAP II largest subunit,Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 MG
2LTO SOLUTIONNMR Eukaryote RNAP II Homo sapiens TDRD3 complex 23066109 Subunit TDRD3,RPB1
5IY6 EM Eukaryote RNAP II Homo sapiens Human holo-PIC in the closed state 27193682 7.20 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1,TFIIH ZN MG
5IY7 EM Eukaryote RNAP II Homo sapiens Human holo-PIC in the open state 27193682 8.60 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1,TFIIH ZN MG
5IY8 EM Eukaryote RNAP II Homo sapiens Human holo-PIC in the initial transcribing state 27193682 7.90 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1,TFIIH ZN MG
5IY9 EM Eukaryote RNAP II Homo sapiens Human holo-PIC in the initial transcribing state (no IIS) 27193682 6.30 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1,TFIIH ZN MG
5IYA EM Eukaryote RNAP II Homo sapiens Human core-PIC in the closed state 27193682 5.40 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1 ZN MG
5IYB EM Eukaryote RNAP II Homo sapiens Human core-PIC in the open state 27193682 3.90 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1 ZN MG
5IYC EM Eukaryote RNAP II Homo sapiens Human core-PIC in the initial transcribing state 27193682 3.90 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,EF A protein 1 ZN MG
5IYD EM Eukaryote RNAP II Homo sapiens Human core-PIC in the initial transcribing state (no IIS) 27193682 3.90 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9,RPB10,RPB11,RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF ZN MG
6DRD EM Eukaryote RNAP II Homo sapiens RNA pol II(g) 30190596 3.90Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,GRinL1A ZN
6O9L EM Eukaryote RNAP II Homo sapiens Human holo-PIC in the closed state 31110295 7.20 Å IC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TFIIA,TBP,TFIIE,TFIIF,TEFA protein 1,TFIIH,MAT1,CDK,Cyclin-H SF4[ IRON/SULFUR CLUSTER ] ZN MG
2C35 XRD Eukaryote RNAP II Homo sapiens Subunits RPB4 and RPB7 of human RNA polymerase II 16282592 2.70 Å RNAP RNAP II 16/19 kDa polypeptide
1QKL SOLUTIONNMR Eukaryote RNAP II Homo sapiens Hrpabc14.4, essential subunit of human RNA polymerases I, II and III 10542096 RNAP RNAP II 14.4 kDa polypeptide
2DB9 SOLUTIONNMR Eukaryote RNAP II Homo sapiens Solution structure of the plus-3 domain of human KIAA0252 protein To be published. Subunit PAF1/RNA polymerase II complex
7LBM EM Eukaryote RNAP II Homo sapiens Structure of the human Mediator-bound transcription pre-initiation complex 33707221 4.80Å RNAP Isoform 2 of Mediator of RNA polymerase II transcription subunit 16,Mediator of RNA polymerase II transcription subunit 23,subunit 24,subunit 25,RNAP,Transcription initiation factor IIA subunit 1,subunit 2,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIE subunit 1,subunit beta,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,TFIIH basal transcription factor complex helicase XPB subunit,TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 4, p52,General transcription factor IIH subunit 2,General transcription factor IIH subunit 3,General transcription factor IIH subunit 5,CDK-activating kinase assembly factor MAT1,Cyclin-dependent kinase 7,Cyclin-H,Mediator of RNA polymerase II transcription subunit 6,subunit 8,subunit 11,subunit 17,subunit 18,subunit 20,subunit 22,subunit 27,subunit 28,subunit 29,subunit 30,subunit 14,subunit 4,subunit 7,subunit 9,subunit 10,subunit 19,subunit 21,subunit 31,subunit 15 SF4,ZN
6A5R EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-2) of the nucleosome 30287617 8.70 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5L EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA 30287617 5.60 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5O EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome 30287617 9.90 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5P EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome 30287617 7.00 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5T EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome 30287617 6.70 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6A5U EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA, tilt conformation 30287617 7.60 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6inQ EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA (+1 position) 30287617 6.90 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B ZN MG
6IR9 EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex bound with ELF1 and Spt4/5, stalled at SHL(-1) of the nucleosome 30733384 3.80 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J4W EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex bound with ELF1 and Spt4/5, stalled at SHL(-5) of the nucleosome 30733384 7.90 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J4X EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex bound with ELF1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1a) 30733384 4.30 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J4Y EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex bound with ELF1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1b) 30733384 4.30 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J4Z EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome 30733384 4.10 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5 ZN MG
6J51 EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome, weak ELF1 (+1 position) 30733384 4.20 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5/4p ZN MG
6J50 EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome (tilted conformation) 30733384 4.70 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.3/H4/H2A/H2B,ELF1,Spt4/5/4p ZN MG
7XN7 EM Eukaryote RNAP II Komagataella phaffii RNA polymerase II elongation complex containing Spt4/5, Elf1, Spt6, Spn1 and Paf1C 35981082 3.10 Å RNAP DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RNA polymerase II third largest subunit B44,RNA polymerase II subunit B32,RPABC1,RPABC23,RNA polymerase II subunit,RPABC3,RNA polymerase subunit ABC10-beta,RNA polymerase II subunit B12.5,RNA polymerase subunit ABC10-alpha,Transcription elongation factor 1 homolog,Transcription elongation factor SPT4,Chromatin elongation factor SPT5,Transcription elongation factor Spt6,Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II,Component of the Paf1p complex,RNAPII-associated chromatin remodeling Paf1 complex subunit,Leo1,RNAP II-associated protein,Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p ZN,MG
1NT9 XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete 12-subunit RNA polymerase II 12746495 4.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
1PQV XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II-TFIIS complex 12914699 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIS ZN MG
1WCM XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete 12-subunit RNA polymerase II at 3.8 angstrom 15591044 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
1Y14 XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of yeast subcomplex of RPB4 and RPB7 15591044 2.30 Å RNAP RPB4,RPB7
1Y1V XRD Eukaryote RNAP II Saccharomyces cerevisiae Refined RNA polymerase II-TFIIS complex 15610738 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIS ZN MG
1Y1W XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete RNA polymerase II elongation complex 15610738 4.00Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
1Y1Y XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II-TFIIS-DNA/RNA complex 15610738 4.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
1Y77 XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete RNA polymerase II elongation complex with substrate analogue GMPCPP 15610738 4.50Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
2B63 XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete RNA polymerase II-RNA inhibitor complex 16341226 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2B8K XRD Eukaryote RNAP II Saccharomyces cerevisiae 12-subunit RNA polymerase II 16765890 4.15Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
2JA5 XRD Eukaryote RNAP II Saccharomyces cerevisiae CPD lesion containing RNA polymerase II elongation complex A 17290000 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2JA6 XRD Eukaryote RNAP II Saccharomyces cerevisiae CPD lesion containing RNA polymerase II elongation complex B 17290000 4.00Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2JA7 XRD Eukaryote RNAP II Saccharomyces cerevisiae CPD lesion containing RNA polymerase II elongation complex C 17290000 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2JA8 XRD Eukaryote RNAP II Saccharomyces cerevisiae CPD lesion containing RNA polymerase II elongation complex D 17290000 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2R7Z XRD Eukaryote RNAP II Saccharomyces cerevisiae Cisplatin lesion containing RNA polymerase II elongation complex 17994106 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 CPT[ Cisplatin ] ZN MG
2R92 XRD Eukaryote RNAP II Saccharomyces cerevisiae Elongation complex of RNA polymerase II with artificial RDRP scaffold 18004386 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2R93 XRD Eukaryote RNAP II Saccharomyces cerevisiae Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop 18004386 4.00Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
2VUM XRD Eukaryote RNAP II Saccharomyces cerevisiae Alpha-amanitin inhibited complete RNA polymerase II elongation complex 18552824 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3FKI XRD Eukaryote RNAP II Saccharomyces cerevisiae 12-subunit RNA polymerase II refined with Zn-SAD data 19289466 3.88Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3H3V XRD Eukaryote RNAP II Saccharomyces cerevisiae Yeast RNAP II containing poly(A)-signal sequence in the active site 19535338 4.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOU XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete RNA polymerase II elongation complex I with a T-U mismatch 19560423 3.20Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
3HOV XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete RNA polymerase II elongation complex II 19560423 3.50Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOW XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3-uridine 19560423 3.60Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOX XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete RNA polymerase II elongation complex VI 19560423 3.65Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOY XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete RNA polymerase II elongation complex VI 19560423 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3HOZ XRD Eukaryote RNAP II Saccharomyces cerevisiae Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3-guanine 19560423 3.65Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3I4M XRD Eukaryote RNAP II Saccharomyces cerevisiae 8-oxoguanine containing RNA polymerase II elongation complex D 19758983 3.70Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3I4N XRD Eukaryote RNAP II Saccharomyces cerevisiae 8-oxoguanine containing RNA polymerase II elongation complex E 19758983 3.90Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3J0K EM Eukaryote RNAP II Saccharomyces cerevisiae Orientation of RNA polymerase II within the human VP16-mediator-pol II-TFIIF assembly 21468301 36.0Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3J1N EM Eukaryote RNAP II Saccharomyces cerevisiae Cryo-EM map of a yeast minimal preinitiation complex interacting with the mediator head module 22579255 16.0Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
3K1F XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of RNA polymerase II in complex with TFIIB 19820686 4.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB ZN
3PO2 XRD Eukaryote RNAP II Saccharomyces cerevisiae Arrested RNA polymerase II elongation complex 21346759 3.30Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 EPE[ 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID?? PEG??DI(HYDROXYETHYL)ETHER] ZN MG ACT[ ACETATE ION ]
3PO3 XRD Eukaryote RNAP II Saccharomyces cerevisiae Arrested RNA polymerase II reactivation intermediate 21346759 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB EPE[ 4-(2-HYDROXYETHYL)-2-PIPERAZINE ETHANESULFONIC ACID?? PEG??DI(HYDROXYETHYL)ETHER ] ZN MG ACT[ ACETATE ION ]
3QT1 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II variant containing a chimeric RPB9-C11 subunit 21454497 4.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3B XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3C XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3D XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid 22056778 3.40Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3E XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP 22056778 3.40Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ IPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4A3F XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ IPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4A3G XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3I XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II binary complex with DNA 22056778 3.80Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3J XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP 22056778 3.70Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
4A3K XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4A3L XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP 22056778 3.50Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4A3M XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP 22056778 3.90Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4A93 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex containing a CPD lesion 22405652 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4BBR XRD Eukaryote RNAP II Saccharomyces cerevisiae Structure of RNA polymerase II-TFIIB complex 23151482 3.40Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB ZN MG
4BBS XRD Eukaryote RNAP II Saccharomyces cerevisiae Structure of an initially transcribing RNA polymerase II-TFIIB complex 23151482 3.60Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB ZN MG
4BXX XRD Eukaryote RNAP II Saccharomyces cerevisiae Arrested RNA polymerase II-Bye1 complex 24003114 3.28Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 ZN MG
4BXZ XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II-Bye1 complex 24003114 4.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 ZN MG
4BY1 XRD Eukaryote RNAP II Saccharomyces cerevisiae Elongating RNA polymerase II-Bye1 TLD complex soaked with AMPCPP 24003114 3.60Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
4BY7 XRD Eukaryote RNAP II Saccharomyces cerevisiae Elongating RNA polymerase II-Bye1 TLD complex 24003114 3.15Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription factor BYE1 EPE[ 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID ] ZN MG
4V1N EM Eukaryote RNAP II Saccharomyces cerevisiae Architecture of the RNA polymerase II-mediator core transcription initiation complex 25652824 7.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TBP,TFIIF subunit alpha,TFIIF subunit beta ZN MG
4V1O EM Eukaryote RNAP II Saccharomyces cerevisiae Architecture of the RNA polymerase II-mediator core transcription initiation complex 25652824 9.70Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TBP,TFIIF subunit alpha,TFIIF subunit beta,Mediator of RNA polymerase II transcription subunit 6/8/11/18/20/22 ZN MG
5C3E XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 3.70Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5C44 XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 3.95Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
5C4A XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 4.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5C4X XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 4.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5FMF EM Eukaryote RNAP II Saccharomyces cerevisiae The P-lobe of RNA polymerase II pre-initiation complex 26483468 6.00Å pIC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,DNA repair helicase RAD25 and SSL2,Transcription elongation factor S-II and DST1,RNA polymerase II pre-Initiation complex(TOA1),TFIIA subunit 2(TOA2), TFIIB(SUA7),TBP,TFIIE subunit alpha(TFA1),TFIIE subunit beta(TFA2),RNA polymerase II pre-Initiation complex (Tfg1),TFIIF subunit beta(TFG2),TFIIB subint 2(TFB2)/5(TFB5),DNA repair helicase RAD3 ZN MG
5FYW EM Eukaryote RNAP II Saccharomyces cerevisiae Transcription initiation complex structures elucidate DNA opening (OC) 27193681 4.35Å OC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,TFIIB,TBP,TFIIF subunit alpha,TFIIF subunit bata,TFIIA large subunit,TFIIA subunit 2,TFIIE subunit alpha,TFIIE subunit beta ZN MG
5FZ5 EM Eukaryote RNAP II Saccharomyces cerevisiae Transcription initiation complex structures elucidate DNA opening (CC) 27193681 8.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit bata,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta ZN MG
5IP7 XRD Eukaryote RNAP II Saccharomyces cerevisiae Structure of RNA polymerase II-Tfg1 peptide complex 27193681 3.52Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5IP9 XRD Eukaryote RNAP II Saccharomyces cerevisiae Structure of RNA polymerase II-TFIIF complex 27193681 3.90Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5OQJ EM Eukaryote RNAP II Saccharomyces cerevisiae Structure of yeast transcription pre-initiation complex with TFIIH 29088706 4.70Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,DNA repair helicase RAD3,RNA polymerase II transcription factor B subunit 1,RNA polymerase II transcription factor B subunit 2,RNA polymerase II transcription factor B subunit 3,RNA polymerase II transcription factor B subunit 4,RNA polymerase II transcription factor B subunit 5,Suppressor of stem-loop protein 1,DNA repair helicase RAD25 SF4[ IRON/SULFUR CLUSTER ] ZN MG
5OQM EM Eukaryote RNAP II Saccharomyces cerevisiae Structure of yeast transcription pre-initiation complex with TFIIH and core mediator 29088706 5.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,subunit TFB2,subunit 3,subunit TFB4,subunit TFB5,subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Mediator of RNA polymerase II transcription subunit 6,subunit 8,subunit 11,subunit 17, subunit 18,subunit 20,subunit 22,subunit 4, subunit 7, subunit 9, subunit 10, subunit 14, subunit 19,subunit 21,subunit 31 SF4[ IRON/SULFUR CLUSTER ]ZN MG
5OT2 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex in the presence of 3D-Napht-A 29087308 3.20Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 AHW[ 2-ethyl-7-methoxy-naphthalene ]ZN MG
5SVA EM Eukaryote RNAP II Saccharomyces cerevisiae Mediator-RNA polymerase II pre-initiation complex 27610567 15.3Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Mediator of RNA polymerase II transcription subunit 6,subunit 8,subunit 11,ubunit 17,subunit 18,subunit 20,subunit 22,subunit 4,subunit 7,subunit 9,subunit 21,subunit 31,DNA repair helicase RAD3,DNA repair helicase RAD25,RNA polymerase II transcription factor B subunit 2,RNA polymerase II transcription factor B subunit 5,Transcription initiation factor IIB,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,TBP,RPB1,Transcription initiation factor TFIID subunit 14 ZN MG
5U5Q XRD Eukaryote RNAP II Saccharomyces cerevisiae 12 subunit RNA polymerase II at room temperature collected using SFX 28300169 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5VVR EM Eukaryote RNAP II Saccharomyces cerevisiae Ternary complex of RNA pol II, transcription scaffold and Rad26 29168508 5.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,DNA repair and recombination protein Rad26 ZN MG
5VVS EM Eukaryote RNAP II Saccharomyces cerevisiae RNA pol II elongation complex 29168508 6.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6GYK EM Eukaryote RNAP II Saccharomyces cerevisiae Structure of a yeast closed complex (core CC1) 30472190 5.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2 ZN MG
6GYL EM Eukaryote RNAP II Saccharomyces cerevisiae Structure of a yeast closed complex with distorted DNA (core CCdist) 30472190 4.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Tfa1,Transcription initiation factor IIE subunit beta ZN MG
6GYM EM Eukaryote RNAP II Saccharomyces cerevisiae Structure of a yeast closed complex with distorted DNA (CCdist) 30472190 6.70Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,General transcription and DNA repair factor IIH helicase subunit XPD,DNA repair helicase RAD3,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,RNA polymerase II transcription factor B subunit 4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,DNA repair helicase RAD25,Transcription initiation factor IIB,TBP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha SF4[ IRON/SULFUR CLUSTER ] ZN MG
6I84 EM Eukaryote RNAP II Saccharomyces cerevisiae Structure of transcribing RNA polymerase II-nucleosome complex 30575770 4.40Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Histone H3.2,Histone H2A type 1,Histone H4,Histone H2B 1.1 ZN MG
1I3Q XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II crystal form I at 3.1 angstrom resolution 11313498 3.10 Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide ZN MG
1I50 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II crystal form II 11313498 2.80 Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide ZN MN
1I6H XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II enlongation complex 11313499 3.30Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide ZN MG
1K83 XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of yeast RNA polymerase II complexed with the inhibitor alpha amanitin 11805306 2.80 Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase II 27KD polypeptide,RNA polymerase II 23KD polypeptide,RNA polymerase II 14.5KD polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase II 8.3KD polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase II 7.7KD polypeptide ZN MG
1NIK XRD Eukaryote RNAP II Saccharomyces cerevisiae Wild type RNA polymerase II 12746498 4.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
1R5U XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II TFIIB complex 14963322 4.50Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide,TFIIB ZN MG
1R9S XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II strand separated elongation complex, matched nucleotide 15537538 4.25Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide UTP ZN MG
1R9T XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II strand separated elongation complex, mismatched nucleotide 15537538 3.50Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide ATP ZN MG
1SFO XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II strand separated elongation complex 14963331 3.61Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide ZN MG
1TWA XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II complexed with ATP 15537538 3.20Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide ATP ZN MN
1TWC XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II complexed with GTP 15537538 3.00Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide GTP ZN MN
1TWF XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II complexed with UTP at 2.3 angstrom resolution 15537538 2.30Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide UTP ZN MN
1TWG XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II complexed with CTP 15537538 3.30Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide CTP ZN MN
1TWH XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II complexed with dATP 15537538 3.40Å RNAP RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27 kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II 14.2KD polypeptide,RNA polymerase I, II and III 8.3 kDa polypeptide,RNA polymerase II 13.6KD polypeptide,RNA polymerase I, II and III 7.7 kDa polypeptide ATP ZN MN
2E2H XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex at 5 mm MG2+ with GTP 17129781 3.95Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide GTP ZN MG
2E2I XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex in 5 mm mg+2 with dGTP 17129781 3.41Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide DGT[ 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE ] ZN MG
2E2J XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex in 5 mm mg+2 with GMPCPP 17129781 3.50Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
2L0I SOLUTIONNMR Eukaryote RNAP II Saccharomyces cerevisiae Solution structure of Rtt103 CTD-interacting domain bound to a Ser2 phosphorylated CTD peptide 20818393 RNAP Regulator of Ty1 transposition protein 103,DNA-directed RNA polymerase CTD
2LO6 SOLUTIONNMR Eukaryote RNAP II Saccharomyces cerevisiae Structure of Nrd1 CID bound to phosphorylated RNAP II CTD 22892239 CTD Protein NRD1,RPB1
2NVQ XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex in 150 mm mg+2 with dUTP 17129781 2.90Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide DUT[ DEOXYURIDINE-5'-TRIPHOSPHATE ] ZN MG
2NVT XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex in 150 mm mg+2 with GMPCPP 17129781 3.36Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
2NVX XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex in 5 mm mg+2 with dUTP 17129781 3.60Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide DUT[ DEOXYURIDINE-5'-TRIPHOSPHATE ] ZN MG
2NVY XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II form II in 150 mm MN+2 17129781 3.40Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide ZN MN
2NVZ XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with UTP, updated 11/2006 17129781 4.30Å EC RNA polymerase II largest subunit,RNA polymerase II 140KD polypeptide,RNA polymerase II 45KD polypeptide,RNA polymerase I, II and III 27kDa polypeptide,RNA polymerase I, II and III 23 kDa polypeptide,RNA polymerase I, II and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide UTP ZN MG
2YU9 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex in 150 mm mg+2 with UTP 17129781 3.40Å EC RNA polymerase II largest subunit,RNA polymerase II 140 kDa polypeptide,RNA polymerase II 45 kDa polypeptide,RNA polymerases I, II, and III 27 kDa polypeptide,RNA polymerases I, II, and III 23 kDa polypeptide,RNA polymerases I, II, and III 14.5 kDa polypeptide,RNA polymerase II subunit 9,RNA polymerases I/II/III subunit 10,RNA polymerase II 13.6 kDa polypeptide,RNA polymerases I, II, and III 7.7 kDa polypeptide UTP ZN MG
3CQZ XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin 18538653 2.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,ALPHA-AMANITin ZN
3GTG XRD Eukaryote RNAP II Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 12mer RNA 19478184 3.78Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3GTJ XRD Eukaryote RNAP II Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 13mer RNA 19478184 3.42Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3GTK XRD Eukaryote RNAP II Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 18mer RNA 19478184 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
3GTL XRD Eukaryote RNAP II Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 13mer with g<>u mismatch 19478184 3.38Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3GTM XRD Eukaryote RNAP II Saccharomyces cerevisiae Co-complex of backtracked RNA polymerase II with TFIIS 19478184 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription elongation factor S-II ZN MG
3GTP XRD Eukaryote RNAP II Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 24mer RNA 19478184 3.90Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3GTQ XRD Eukaryote RNAP II Saccharomyces cerevisiae Backtracked RNA polymerase II complex induced by damage 19478184 3.80Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
3K7A XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of an RNA polymerase II-TFIIB complex 19965383 3.80Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,Transcription initiation factor IIB ZN
3M3Y XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex C 20448203 3.18Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 C7P[ cis-diammine(pyridine)chloroplatinum(II) ] ZN MG
3RZD XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt RNA 21798951 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3RZO XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 4-nt RNA 21798951 3.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
3S14 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 6-nt RNA 21798951 2.85Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S15 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 7-nt RNA 21798951 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S16 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with an 8-nt RNA 21798951 3.24Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3M4O XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex B 20448203 3.57Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 C7P[ cis-diammine(pyridine)chloroplatinum(II) ] ZN MG
3S17 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 9-nt RNA 21798951 3.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S1M XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt RNA (variant 1) 21798951 3.13Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S1N XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt RNA (variant 2) 21798951 3.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S1Q XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt 3-deoxy RNA soaked with ATP 21798951 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ATP ZN MG
3S1R XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt 3-deoxy RNA soaked with GTP 21798951 3.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 GTP ZN MG
3S2D XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 5-nt RNA containing a 5Br-U 21798951 3.20Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
3S2H XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initiation complex with a 6-nt RNA containing a 2[prime]-iodo ATP 21798951 3.30Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4V1M EM Eukaryote RNAP II Saccharomyces cerevisiae Architecture of the RNA polymerase II-mediator core transcription initiation complex 25652824 6.60Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4X67 XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of elongating yeast RNA polymerase II stalled at oxidative cyclopurine DNA lesions. 25605892 4.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
4X6A XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of yeast RNA polymerase II encountering oxidative cyclopurine DNA lesions 25605892 3.96Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN
4Y52 XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of 5-carboxycytosine recognition by RNA polymerase II during transcription elongation. 26123024 3.50Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4Y7N XRD Eukaryote RNAP II Saccharomyces cerevisiae The structure insight into 5-carboxycytosine recognition by RNA polymerase II during transcription elongation. 26123024 3.30Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 G2P[ PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER ] ZN MG
5C4J XRD Eukaryote RNAP II Saccharomyces cerevisiae Crystal structure of a transcribing RNA polymerase II complex reveals a complete transcription bubble 26186291 4.00Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5W4U XRD Eukaryote RNAP II Saccharomyces cerevisiae Pol II elongation complex with an N6-methyladenine-containing template 28933854 3.60Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
5W51 XRD Eukaryote RNAP II Saccharomyces cerevisiae Pol II elongation complex with an n6-methyladenine-containing template and a matched UMPNPP 28933854 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 2KH[ 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine ] ZN MG
6BLO XRD Eukaryote RNAP II Saccharomyces cerevisiae Pol II elongation complex with an abasic lesion at I+1 position 29487211 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6BLP XRD Eukaryote RNAP II Saccharomyces cerevisiae Pol II elongation complex with an abasic lesion at I+1 position, soaking AMPCPP 29487211 3.20Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[[DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
6BM2 XRD Eukaryote RNAP II Saccharomyces cerevisiae Pol II elongation complex with an abasic lesion at I-1 position 29487211 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6BM4 XRD Eukaryote RNAP II Saccharomyces cerevisiae Pol II elongation complex with an abasic lesion at I-1 position,soaking UMPNPP 29487211 2.95Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 2KH[ 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine ] ZN MG
6BQF XRD Eukaryote RNAP II Saccharomyces cerevisiae Pol II elongation complex with dt-apat I+1, I-1 position 29487211 3.35Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6O6C EM Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex arrested at a CPD lesion 31200019 3.10Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UPX XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 32284409 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UPY XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2e 32284409 3.40Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 APC[ DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER ]ZN MG
6UPZ XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3 32284409 3.10Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 PPV[ PYROPHOSPHATE ] ZN MG
6UQ0 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4 32284409 3.56Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UQ2 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with Dg in state 1 32284409 3.20Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UQ1 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 6 32284409 3.60Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
6UQ3 XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 5 32284409 3.47Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 PPV[ PYROPHOSPHATE ] ZN MG
3GTO XRD Eukaryote RNAP II Saccharomyces cerevisiae Backtracked RNA polymerase II complex with 15mer RNA 19478184 4.00 Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
7KED XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with unnatural base dTPT3 34140682 3.60Å EM RNAP ZN,MG
7KEE XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site 34140682 3.45Å EM RNAP WCG [insert into `user` values (1S)-1,4-anhydro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-1-(3-methoxynaphthalen-2-yl)-D-ribitol],ZN,MG
7KEF XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state 34140682 3.89Å EM RNAP WCG [insert into `user` values (1S)-1,4-anhydro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-1-(3-methoxynaphthalen-2-yl)-D-ribitol],ZN,MG
7RIQ XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex scaffold 1 without polyamide 35022237 3.00Å EM RNAP ZN,MG
7RIM XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 35022237 2.90Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7RIQ XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP 35022237 3.30Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7RIW XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex scaffold 2, without polyamide 35022237 3.20Å EM RNAP ZN,MG
7RIX XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2 35022237 3.40Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7RIP XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP 35022237 3.30Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7RIY XRD Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2 soaked with UTP 35022237 3.70Å EM RNAP 5N0[3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[insert into `user` values (1-methyl-4-{[1-methyl-4-({1-methyl-4-[insert into `user` values (1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-ca
7ML4 EM Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initially transcribing complex (ITC) 35051353 3.10Å IC RNAP,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIB,BJ4_G0050160.mRNA.1.CDS.1,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH,Tfb1,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH subunit TFB5,RNA polymerase II transcription factor B subunit 2,Transcription initiation factor IIE subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,TATA-box-binding protein,Transcription initiation factor IIE subunit alpha SF4,MG,ZN
7MEI EM Eukaryote RNAP II Saccharomyces cerevisiae Composite structure of EC+EC 35051353 3.54Å EC RNAP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta MG,ZN
7MK9 EM Eukaryote RNAP II Saccharomyces cerevisiae Complex structure of trailing EC of EC+EC (trailing EC-focused) 35051353 3.54Å EC RNAP,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta MG,ZN
7MKA EM Eukaryote RNAP II Saccharomyces cerevisiae Complex structure of trailing EC of EC+EC (trailing EC-focused) 35051353 3.54Å EC RNAP MG,ZN
7ML1 EM Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II pre-initiation complex (PIC2) 35051353 4.00Å PIC RNAP,Tfb1,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit SSL1,RNA polymerase II transcription factor B subunit 2,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH helicase subunit XPB,BJ4_G0050160.mRNA.1.CDS.1,TATA-box-binding protein,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta SF4,MG,ZN
7ML2 EM Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II pre-initiation complex (PIC3) 35051353 3.40Å PIC RNAP,Tfb1,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,BJ4_G0004860.mRNA.1.CDS.1,Tfb1,Tfb4,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH,RNA polymerase II transcription factor B subunit 2,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH helicase subunit XPB,BJ4_G0050160.mRNA.1.CDS.1 SF4,MG,ZN
7ML4 EM Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II initially transcribing complex (ITC) 35051353 3.10Å PIC RNAP,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIB,BJ4_G0050160.mRNA.1.CDS.1,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH,Tfb1,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH subunit TFB5,RNA polymerase II transcription factor B subunit 2,Transcription initiation factor IIE subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,TATA-box-binding protein,Transcription initiation factor IIE subunit alpha SF4,MG,ZN
7O4I EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble 34133942 3.20Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O4J EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex (consensus) 34133942 2.90Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O4K EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast TFIIH in the contracted state within the pre-initiation complex 34133942 3.60Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O4L EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast TFIIH in the expanded state within the pre-initiation complex 34133942 3.40Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O72 EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA 34133942 3.40Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O73 EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA 34133942 3.40Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB2,subunit TFB1,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7O75 EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA 34133942 3.20Å PIC RNAP,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB2,subunit TFB1,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA large subunit,subunit 2,Transcription initiation factor IIE subunit alpha,subunit beta ADP,SF4,BEF,MG,ZN
7ML0 EM Eukaryote RNAP II Saccharomyces cerevisiae RNA polymerase II pre-initiation complex (PIC1) 35051353 3.00Å PIC RNAP,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,TATA-box-binding protein,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit SSL1,RNA polymerase II transcription factor B subunit 2,General transcription and DNA repair factor IIH subunit TFB5,BJ4_G0050160.mRNA.1.CDS.1,General transcription and DNA repair factor IIH helicase subunit XPB SF4,MG,ZN
7MKA EM Eukaryote RNAP II Saccharomyces cerevisiae Structure of EC+EC (leading EC-focused) 3.54 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC5,RPABC4 ZN,MG
7MK9 EM Eukaryote RNAP II Saccharomyces cerevisiae Complex structure of trailing EC of EC+EC (trailing EC-focused) 3.54 Å EC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta ZN,MG
7ZS9 EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A) 36411341 3.10 Å PIC RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 SF4[IRON/SULFUR CLUSTER],ZN,MG
7ZSA EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B) 36411341 4.00 Å PIC RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 SF4[IRON/SULFUR CLUSTER],ZN,MG
7ZSB EM Eukaryote RNAP II Saccharomyces cerevisiae Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, complex C 36411341 6.60 Å PIC RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,TATA-box-binding protein,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription initiation factor IIA large subunit,Transcription initiation factor IIA subunit 2,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit beta,General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH subunit TFB1,General transcription and DNA repair factor IIH subunit TFB2,RNA polymerase II transcription factor B subunit 3,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB5,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH helicase subunit XPB,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 SF4[IRON/SULFUR CLUSTER],ZN,MG
7UIO EM Eukaryote RNAP II Saccharomyces cerevisiae S288C Mediator-PIC Early (Composite Model) 36731470 3.30 Å PIC Mediator of RNA polymerase II transcription subunit 15,1,2,3,4,6,7,8,9,10,11,14,5,16,17,18,19,20,21,22,31,Regulatory protein GAL4,RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription elongation factor S-II ASP[ASPARTIC ACID],THR[THREONINE],ALA[ALANINE],ZN
7UIF EM Eukaryote RNAP II Saccharomyces cerevisiae S288C Mediator-PIC Early (Core B) 36731470 4.60 Å PIC RPB1,RPB2,RPB3,RPB4,RPB7,RPB9,RPB11,RPABC1,RPABC2,RPABC3,RPABC4,RPABC5,Transcription initiation factor IIB,Transcription initiation factor IIF subunit alpha,Transcription initiation factor IIF subunit beta,Transcription elongation factor S-II,Mediator of RNA polymerase II transcription subunit 1,4,6,7,8,9,10,11,14,17,18,19,20,21,22,31
7NKY EM Eukaryote RNAP II Saccharomyces cerevisiae, Xenopus laevis RNA Polymerase II-Spt4/5-nucleosome-FACT structure 33846633 3.20Å RNAP RNAP,Chromatin elongation factor SPT4,Transcription elongation factor SPT5,FACT complex subunit POB3,FACT complex subunit SPT16,Histone H3.2,Histone H4,Histone H2A type 1,Histone H2B 1.1 MG,ZN
7NKX EM Eukaryote RNAP II Saccharomyces cerevisiae, Xenopus laevis RNA polymerase II-Spt4/5-nucleosome-Chd1 structure 33846633 2.90Å RNAP RNAP,Histone H3.2,Histone H4,Histone H2A type 1,Histone H2B 1.1,Chromo domain-containing protein 1,Chromatin elongation factor SPT4,Chromatin elongation factor SPT5 ADP,BEF,MG,ZN
3H0G XRD Eukaryote RNAP II Schizosaccharomyces pombe RNA polymerase II from schizosaccharomyces pombe 19458260 3.65 Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12 ZN MG
4PZ6 XRD Eukaryote RNAP II Schizosaccharomyces pombe PCE1 guanylyltransferase bound to Ser2/Ser5 phosphorylated RNA pol II CTD 24939935 2.41Å RNAP mRNA-capping enzyme subunit alpha, RPB1 GMP
5U0S EM Eukaryote RNAP II Schizosaccharomyces pombe Cryo-EM structure of the mediator-RNAPII complex 28241144 7.80Å RNAP Mediator complex subunit 6,Mediator complex subunit 8,Mediator complex subunit 17,Mediator complex subunit 18,Mediator complex subunit 20,Mediator complex subunit 11,Mediator complex subunit 22,Mediator complex subunit 14,Mediator complex subunit 4,Mediator complex subunit 7,Mediator complex subunit 21,Mediator complex subunit 31,Mediator complex subunit 27,Mediator complex subunit 9,Mediator complex subunit 19,Mediator complex subunit 10,RPB1, RPB2,RPB3,RPB4, RPB5,RPB6,RPB7,RPB8,RPB9,RPB10, RPB11,RPB12
6EXV EM Eukaryote RNAP II Sus scrofa Structure of mammalian RNA polymerase II elongation complex inhibited by alpha-amanitin 29550768 3.60 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12
6GMH EM Eukaryote RNAP II Sus scrofa Structure of activated transcription complex pol II-DSIF-paf-SPT6 30135578 3.10Å RNAP RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,SPT6,CTR9,LEO1,PAF1,WD repeat-containing protein 61,CDC73,Spt4,Spt5 ZN MG
6GML EM Eukaryote RNAP II Sus scrofa Structure of paused transcription complex pol II-DSIF-NELF 30135580 3.20Å EC DNA-directed RNA polymerase subunit,beta,C,E,F,RPABC3,RPB9,Negative elongation factor A,Negative elongation factor B,Negative elongation factor C/D,Negative elongation factor E,Spt4,Spt5,D,G ZN MG
6TED EM Eukaryote RNAP II Sus scrofa Structure of complete, activated transcription complex pol II-DSIF-PAF-SPT6 uncovers allosteric elongation activation by RTF1 32541898 3.10 Å EC RPB1,RPB2,RPB3,RPB4,RPB5,RPB6,RPB7,RPB8,RPB9, RPB10,RPB11, RPB12,CTR9 homolog, RTF1 homolog,LEO1,RAF1,WD repeat-containing protein 61,Spt4/5/6 ZN MG
7OZP EM Eukaryote RNAP II Sus scrofa domesticus RNA Polymerase II dimer (Class 3) 34530439 3.80Å RNAP RNAP ZN
7OZN EM Eukaryote RNAP II Sus scrofa domesticus RNA Polymerase II dimer (Class 1) 34530439 3.50Å RNAP RNAP ZN
7OZO EM Eukaryote RNAP II Sus scrofa domesticus RNA Polymerase II dimer (Class 2) 34530439 3.80Å RNAP RNAP ZN
7B7U EM Eukaryote RNAP II Sus scrofa domesticus, Homo sapiens Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2 34021257 2.80Å RNAP RNAP ZN
7NVU EM Eukaryote RNAP II Sus scrofa, Homo sapiens RNA polymerase II core pre-initiation complex with open promoter DNA 33902107 2.50Å PIC RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,subunit 1,General transcription factor IIE subunit 1,subunit beta MG,ZN
7NVU EM Eukaryote RNAP II Sus scrofa, Homo sapiens RNA polymerase II core pre-initiation complex with open promoter DNA 33902107 2.50Å PIC RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,subunit 1,General transcription factor IIE subunit 1,subunit beta MG,ZN
7NVZ EM Eukaryote RNAP II Sus scrofa, Homo sapiens RNA polymerase II pre-initiation complex with closed promoter DNA in distal position 33902107 7.20Å PIC TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 1,subunit 4,subunit 3,subunit 5,subunit 2,General transcription and DNA repair factor IIH helicase subunit XPB,CDK-activating kinase assembly factor MAT1,RNAP,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,subunit 2,Transcription initiation factor IIA subunit 1,General transcription factor IIE subunit 1,subunit beta SF4,MG,ZN
7F4G EM Eukaryote RNAP II Sus scrofa, Homo sapiens Structure of RPAP2-bound RNA polymerase II 35476980 2.78Å RNAP RNAP ZN
7NVY EM Eukaryote RNAP II Sus scrofa, Homo sapiens RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position 33902107 7.30Å PIC TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 1,subunit 4,subunit 3,subunit 5,subunit 2,General transcription and DNA repair factor IIH helicase subunit XPB,CDK-activating kinase assembly factor MAT1,RNAP,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,subunit 2,Transcription initiation factor IIA subunit 1,General transcription factor IIE subunit 1,subunit beta,CDK-activating kinase assembly factor MAT1 SF4,MG,ZN
7NW0 EM Eukaryote RNAP II Sus scrofa, Homo sapiens RNA polymerase II pre-initiation complex with open promoter DNA 33902107 6.60Å PIC TFIIH basal transcription factor complex helicase XPD subunit,General transcription factor IIH subunit 1,subunit 4,subunit 3,subunit 5,subunit 2,General transcription and DNA repair factor IIH helicase subunit XPB,CDK-activating kinase assembly factor MAT1,RNAP,RNA_pol_L_2 domain-containing protein,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,subunit 2,Transcription initiation factor IIA subunit 1,General transcription factor IIE subunit 1,subunit beta,CDK-activating kinase assembly factor MAT1 ADP,BEF,SF4,MG,ZN
7B0Y EM Eukaryote RNAP II Sus scrofa, Homo sapiens Structure of a transcribing RNA polymerase II-U1 snRNP complex 33446560 3.60Å RNAP RNAP,U1 small nuclear ribonucleoprotein 70 kDa,U1 small nuclear ribonucleoprotein A,Small nuclear ribonucleoprotein Sm D2,Small nuclear ribonucleoprotein F,Small nuclear ribonucleoprotein E,Small nuclear ribonucleoprotein G,Small nuclear ribonucleoprotein Sm D3,Small nuclear ribonucleoprotein-associated protein,Small nuclear ribonucleoprotein Sm D1 MG,ZN
7OO3 EM Eukaryote RNAP II Sus scrofa, Homo sapiens Pol II-CSB-CSA-DDB1-UVSSA (Structure1) 34526721 2.80Å RNAP RNAP,DNA excision repair protein ERCC-8,DNA excision repair protein ERCC-6,CSB element,UV-stimulated scaffold protein A,DNA damage-binding protein 1 ZN,MG
7OOB EM Eukaryote RNAP II Sus scrofa, Homo sapiens Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2) 34526721 2.70Å RNAP RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,DNA excision repair protein ERCC-6,DNA damage-binding protein 1,DNA excision repair protein ERCC-8 ADP,BEF,ZN,MG
7OOP EM Eukaryote RNAP II Sus scrofa, Homo sapiens Pol II-CSB-CSA-DDB1-UVSSA-PAF-SPT6 (Structure 3) 34526721 2.90Å RNAP RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription elongation factor SPT6,LEO1 helix,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WD repeat-containing protein 61,Parafibromin,DNA excision repair protein ERCC-8,DNA excision repair protein ERCC-6,UV-stimulated scaffold protein A,DNA damage-binding protein 1 ZN,MG
7OPC EM Eukaryote RNAP II Sus scrofa, Homo sapiens Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4) 34526721 3.00Å RNAP RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription elongation factor SPT6,LEO1 helix,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WD repeat-containing protein 61,Parafibromin,DNA excision repair protein ERCC-8,DNA excision repair protein ERCC-6,UV-stimulated scaffold protein A,DNA damage-binding protein 1,Cullin-4A,E3 ubiquitin-protein ligase RBX1 ZN,MG
7OPD EM Eukaryote RNAP II Sus scrofa, Homo sapiens Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 5) 34526721 3.00Å RNAP RNAP,RPOL4c domain-containing protein,RNA_pol_L_2 domain-containing protein,Transcription elongation factor SPT6,LEO1 helix,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WD repeat-containing protein 61,Parafibromin,DNA excision repair protein ERCC-8,DNA excision repair protein ERCC-6,UV-stimulated scaffold protein A,DNA damage-binding protein 1,Cullin-4A,E3 ubiquitin-protein ligase RBX1 ZN,MG
7ZWD EM Eukaryote RNAP II Sus scrofa, Homo sapiens Structure of SNAPc containing Pol II pre-initiation complex bound to U5 snRNA promoter (CC) 36424526 3.00 Å PIC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB9,RPABC3,RPABC5,RNA polymerase II subunit D,E,F,J,K,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 2,snRNA-activating protein complex subunit 1,snRNA-activating protein complex subunit 3,snRNA-activating protein complex subunit 4,snRNA-activating protein complex subunit 5 ZN,MG
7ZX7 EM Eukaryote RNAP II Sus scrofa, Homo sapiens Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (CC) 36424526 3.40 Å PIC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB9,RPABC3,RPABC5,RNA polymerase II subunit D,E,F,J,K,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 2,snRNA-activating protein complex subunit 1,snRNA-activating protein complex subunit 3,snRNA-activating protein complex subunit 4,snRNA-activating protein complex subunit 5 ZN,MG
7ZX8 EM Eukaryote RNAP II Sus scrofa, Homo sapiens Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC) 36424526 3.00 Å PIC DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB9,RPABC3,RPABC5,RNA polymerase II subunit D,E,F,J,K,Transcription initiation factor IIB,TATA-box-binding protein,General transcription factor IIF subunit 1,General transcription factor IIF subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 2,snRNA-activating protein complex subunit 1,snRNA-activating protein complex subunit 3,snRNA-activating protein complex subunit 4,snRNA-activating protein complex subunit 5 ZN,MG
7OL0 EM Eukaryote RNAP II Sus scrofa, Homo sapiens, HIV whole-genome vector AA1305#18 Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5) 34265249 3.00Å EC RNAP,Transcription elongation factor SPT5 ZN,MG
7OKX EM Eukaryote RNAP II Sus scrofa, Homo sapiens, HIV whole-genome vector AA1305#18 Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5)-ELL2-EAF1 (composite structure) 34265249 3.30Å EC RNAP,RNA polymerase II elongation factor ELL2,ELL-associated factor 1,Transcription elongation factor SPT5 ZN,MG
7OKY EM Eukaryote RNAP II Sus scrofa, Homo sapiens, HIV whole-genome vector AA1305#18 Structure of active transcription elongation complex Pol II-DSIF-ELL2-EAF1(composite structure) 34265249 4.14Å EC RNAP,RNA polymerase II elongation factor ELL2,ELL-associated factor 1,Transcription elongation factor SPT5,Transcription elongation factor SPT5 ZN,MG
7UND EM Eukaryote RNAP II Sus scrofa, Homo sapiens, Xenopus laevis Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38) 35709268 3.00 Å RNAP DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB8,RPB9,RPB10,RPB11,RPOL4c domain-containing protein,DNA-directed RNA polymerase II subunit E,RPABC2,RNA polymerase II subunit K,Transcription elongation factor SPT6,Transcription elongation factor A protein 1,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein RTF1 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WDR61,Parafibromin,Transcription elongation factor SPT4,Transcription elongation factor SPT5,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 ZN,MG
7UNC EM Eukaryote RNAP II Sus scrofa, Homo sapiens,Xenopus laevis Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome 35709268 3.00 Å RNAP DNA-directed RNA polymerase subunit,DNA-directed RNA polymerase subunit beta,RPB3,RPB7,RPB8,RPB9,RPB10,RPB11,RPOL4c domain-containing protein,DNA-directed RNA polymerase II subunit E,RPABC2,RNA polymerase II subunit K,Transcription elongation factor SPT6,Transcription elongation factor A protein 1,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein RTF1 homolog,RNA polymerase-associated protein LEO1,RNA polymerase II-associated factor 1 homolog,WDR61,Parafibromin,Transcription elongation factor SPT5,Histone H3.2,Histone H4,Histone H2A,Histone H2B 1.1 ZN,MG
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